Basic Information
Locus ID:
Oco15G003400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 3330560 | 3348919 | + | Oco15G003400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.07 | 113,620.47 Da | 49.96 | 78.19 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18793 | SF2_C_SNF | 874 | 979 | 3.88251E-48 | - |
| CDD | cd18008 | DEXDc_SHPRH-like | 279 | 636 | 1.23645E-81 | - |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 872 | 969 | 2.6E-13 | IPR001650 |
| Pfam | PF00176 | SNF2 family N-terminal domain | 294 | 713 | 1.3E-67 | IPR000330 |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 751 | 787 | 5.4E-5 | IPR018957 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 263 | 636 | 2.73E-45 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 644 | 1026 | 1.16E-53 | IPR027417 |
| SUPERFAMILY | SSF57850 | RING/U-box | 740 | 792 | 3.12E-10 | - |
| Gene3D | G3DSA:3.40.50.10810 | - | 247 | 336 | 1.8E-11 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 737 | 802 | 2.1E-11 | IPR013083 |
| Gene3D | G3DSA:3.40.50.300 | - | 651 | 1027 | 1.2E-62 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 508 | 637 | 3.0E-28 | IPR038718 |
| Gene3D | G3DSA:3.40.50.10810 | - | 405 | 498 | 1.0E-11 | IPR038718 |
| SMART | SM00487 | ultradead3 | 275 | 606 | 2.4E-26 | IPR014001 |
| SMART | SM00184 | ring_2 | 751 | 791 | 7.9E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 886 | 969 | 4.9E-16 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 751 | 787 | 10.910707 | IPR001841 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 425 | 598 | 12.539913 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 850 | 1022 | 12.953815 | IPR001650 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 766 | 775 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 17 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 419 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 396 | 410 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 33 | 51 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 487 | 529 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 365 | 395 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 489 | 508 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 349 | 364 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 192 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 70 | 93 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 77 | 93 | - | - |
Gene Ontology
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G50410.1 | SNF2 domain-containing protein / helicase domain-containing protein / zinc finger protein-related. | 0 |
| RefSeq | XP_006659184.1 | helicase-like transcription factor CHR28 [Oryza brachyantha] | 0 |
| Q94BR5 | Helicase-like transcription factor CHR28 OS=Arabidopsis thaliana OX=3702 GN=CHR28 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CAP8 | Helicase-like transcription factor CHR28 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_000439 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology