Basic Information
Locus ID:
Oco15G002730
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Prokaryotic RING finger family 4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 2693548 | 2696176 | - | Oco15G002730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.88 | 51,076.48 Da | 63.69 | 67.14 | -0.57 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16745 | RING-HC_AtRMA_like | 251 | 295 | 6.17172E-30 | - |
| Pfam | PF00097 | Zinc finger, C3HC4 type (RING finger) | 253 | 293 | 3.7E-10 | IPR018957 |
| SUPERFAMILY | SSF57850 | RING/U-box | 249 | 300 | 7.07E-18 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 223 | 335 | 6.8E-18 | IPR013083 |
| SMART | SM00184 | ring_2 | 253 | 293 | 2.4E-10 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 253 | 294 | 14.053096 | IPR001841 |
| ProSitePatterns | PS00518 | Zinc finger RING-type signature. | 268 | 277 | - | IPR017907 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 147 | 168 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 392 | 422 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 32 | 55 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 431 | 454 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 310 | 343 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 181 | 209 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 364 | 483 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G19310.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_015696052.2 | uncharacterized protein LOC102722883 [Oryza brachyantha] | 0 |
| Q99942 | E3 ubiquitin-protein ligase RNF5 OS=Homo sapiens OX=9606 GN=RNF5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CBV0 | RING-type E3 ubiquitin transferase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_000345 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 3 | AH08.409, BH08.418, CH08.493 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0618500, gene-QOZ80_8BG0646000 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0695010.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_007280, gene-QYE76_017957 |
| Poaceae | Oryza coarctata | 2 | Oco15G002730, Oco16G002750 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g06510.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_07G054600 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0701109 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G011530, Chr29G011080 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G511100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG041150, gene_TRIDC7BG031060 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G296500.1, TraesCS7B02G189000.1 ... |
| Poaceae | Zea mays | 3 | Zm00001eb130470_P001, Zm00001eb340170_P001 ... |
| Poaceae | Zoysia japonica | 2 | nbis-gene-39018, nbis-gene-41664 |
| Poaceae | Zoysia macrostachya | 3 | Zma_g22520, Zma_g22521, Zma_g23657 |