Basic Information
Locus ID:
Oco15G001250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 1180914 | 1191052 | + | Oco15G001250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.54 | 46,572.55 Da | 36.55 | 84.76 | -0.13 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 44 | 123 | 3.03911E-10 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 186 | 270 | 6.0E-18 | IPR000210 |
| Pfam | PF00651 | BTB/POZ domain | 281 | 349 | 3.4E-7 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 41 | 129 | 4.91E-14 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 172 | 281 | 4.51E-22 | IPR011333 |
| SUPERFAMILY | SSF54695 | POZ domain | 286 | 349 | 2.83E-6 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 42 | 151 | 1.0E-8 | IPR008974 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 165 | 281 | 5.8E-26 | IPR011333 |
| Gene3D | G3DSA:6.10.250.3030 | - | 349 | 399 | 1.9E-8 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 282 | 348 | 3.8E-8 | IPR011333 |
| SMART | SM00225 | BTB_4 | 195 | 350 | 3.6E-14 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 195 | 261 | 16.962286 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19000.2 | BTB-POZ and MATH domain 1. | 0 |
| RefSeq | XP_006659793.3 | BTB/POZ and MATH domain-containing protein 1-like [Oryza brachyantha] | 0 |
| Q8L765 | BTB/POZ and MATH domain-containing protein 1 OS=Arabidopsis thaliana OX=3702 GN=BPM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CK29 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032118 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_018090, gene-QYE76_018091, gene-QYE76_026583 ... |
| Poaceae | Oryza coarctata | 2 | Oco15G001250, Oco16G001400 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g03510.1 |