Basic Information
Locus ID:
Oco15G001240
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Speckle-type POZ protein-like protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 1177540 | 1180105 | + | Oco15G001240 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.44 | 32,733.40 Da | 48.90 | 82.69 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 66 | 128 | 6.27251E-4 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 139 | 257 | 7.4E-17 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 133 | 256 | 4.39E-21 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 64 | 128 | 5.72E-5 | - |
| Gene3D | G3DSA:1.25.40.420 | - | 232 | 293 | 9.1E-18 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 129 | 217 | 3.8E-17 | IPR011333 |
| SMART | SM00225 | BTB_4 | 146 | 260 | 4.4E-11 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 146 | 214 | 16.341825 | IPR000210 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_015649170.2 | BTB/POZ and MATH domain-containing protein 2 [Oryza sativa Japonica Group] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CLN0 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032119 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Oco15G001240.