Basic Information
Locus ID:
Oco15G001230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 1176056 | 1177054 | + | Oco15G001230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.62 | 31,830.97 Da | 38.21 | 78.58 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 23 | 140 | 1.00432E-17 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 196 | 250 | 8.3E-5 | IPR000210 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 21 | 147 | 3.6E-18 | - |
| SUPERFAMILY | SSF54695 | POZ domain | 163 | 241 | 4.32E-8 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 148 | 257 | 2.5E-9 | IPR011333 |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 21 | 145 | 5.9E-14 | IPR008974 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 14 | 143 | 11.26263 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G21010.1 | BTB-POZ and MATH domain 5. | 0 |
| RefSeq | XP_025883361.1 | BTB/POZ and MATH domain-containing protein 3 [Oryza sativa Japonica Group] | 0 |
| Q1EBV6 | BTB/POZ and MATH domain-containing protein 5 OS=Arabidopsis thaliana OX=3702 GN=BPM5 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CIQ6 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032121 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Oryza coarctata | 1 | Oco15G001230 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g03490.1 |