Basic Information
Locus ID:
Oco15G001220
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Broad-Complex, Tramtrack and Bric a brac
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 1173614 | 1174693 | + | Oco15G001220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.04 | 38,849.13 Da | 39.52 | 74.60 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00121 | MATH | 24 | 152 | 4.89104E-16 | IPR002083 |
| Pfam | PF00651 | BTB/POZ domain | 181 | 282 | 3.8E-14 | IPR000210 |
| SUPERFAMILY | SSF54695 | POZ domain | 173 | 282 | 5.49E-16 | IPR011333 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 21 | 161 | 7.19E-23 | - |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 174 | 279 | 3.7E-16 | IPR011333 |
| Gene3D | G3DSA:6.10.250.3030 | - | 280 | 344 | 1.7E-9 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 21 | 159 | 3.8E-18 | IPR008974 |
| SMART | SM00225 | BTB_4 | 181 | 283 | 5.9E-12 | IPR000210 |
| ProSiteProfiles | PS50097 | BTB domain profile. | 181 | 245 | 10.881778 | IPR000210 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 22 | 154 | 14.612235 | IPR002083 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G06190.1 | BTB-POZ and MATH domain 2. | 0 |
| RefSeq | XP_015649168.1 | BTB/POZ and MATH domain-containing protein 2 [Oryza sativa Japonica Group] | 0 |
| Q9M8J9 | BTB/POZ and MATH domain-containing protein 2 OS=Arabidopsis thaliana OX=3702 GN=BPM2 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1CK59 | BTB domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_032122 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_8AG0616170, gene-QOZ80_8BG0643670 |
| Poaceae | Hordeum vulgare | 2 | HORVU.MOREX.r3.7HG0703140.1.CDS1 ... |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_020918, gene-QYE76_021008 |
| Poaceae | Oryza coarctata | 1 | Oco15G001220 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g03480.1 |
| Poaceae | Thinopyrum elongatum | 1 | Tel7E01G535900 |
| Poaceae | Triticum aestivum | 2 | TraesCS7B02G211000.1.cds1, TraesCS7D02G307800.1.cds1 |