Basic Information
Locus ID:
Oco15G000230
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RING-like zinc finger
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 232765 | 238481 | + | Oco15G000230 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.81 | 37,181.79 Da | 71.73 | 68.34 | -0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16486 | mRING-H2-C3H2C2D_ZSWM2 | 114 | 157 | 2.43324E-23 | - |
| Pfam | PF13639 | Ring finger domain | 114 | 157 | 8.2E-12 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 91 | 166 | 5.65E-20 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 82 | 162 | 1.4E-20 | IPR013083 |
| SMART | SM00184 | ring_2 | 115 | 156 | 3.0E-9 | IPR001841 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 115 | 157 | 12.312242 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 312 | 337 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G71980.1 | Protease-associated (PA) RING/U-box zinc finger family protein. | 0 |
| RefSeq | XP_040382940.1 | LOW QUALITY PROTEIN: receptor homology region, transmembrane domain- and RING domain-containing protein 2-like [Oryza brachyantha] | 0 |
| Q69U49 | Receptor homology region, transmembrane domain- and RING domain-containing protein 2 OS=Oryza sativa subsp. japonica OX=39947 GN=RMR1 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0APV9 | RING-type domain-containing protein OS=Oryza glumipatula OX=40148 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology