Basic Information
Locus ID:
Oco15G000020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
E3 ubiquitin ligase SUD1
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG15 | 24892 | 33520 | - | Oco15G000020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.48 | 38,452.38 Da | 32.55 | 118.96 | 0.82 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_015650602.1 | probable E3 ubiquitin ligase SUD1 [Oryza sativa Japonica Group] | 0 |
| TrEMBL | A0A6G1CHC9 | RING-CH-type domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_020743 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 2 | BH01.1398, CH08.5 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_8AG0614080 |
| Poaceae | Hordeum vulgare | 3 | HORVU.MOREX.r3.1HG0093830.1, HORVU.MOREX.r3.5HG0513360.1 ... |
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_015076, gene-QYE76_015082, gene-QYE76_033712 ... |
| Poaceae | Oryza coarctata | 1 | Oco15G000020 |
| Poaceae | Oryza sativa | 1 | LOC_Os08g01040.1 |
| Poaceae | Paspalum vaginatum | 2 | gene-BS78_07G001100, gene-BS78_10G266300 |
| Poaceae | Puccinellia tenuiflora | 2 | Pt_Chr0400020, Pt_Chr0505827 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr20G014250, Chr29G013220 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G728300, Tel7E01G597300 |
| Poaceae | Triticum dicoccoides | 5 | gene_TRIDC1AG063260, gene_TRIDC5AG058880 ... |
| Poaceae | Triticum aestivum | 5 | TraesCS5A02G405100.1, TraesCS5D02G415200.1 ... |