Basic Information
Locus ID:
Oco14G016830
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the helicase family. RecQ subfamily
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 20644555 | 20652064 | + | Oco14G016830 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.42 | 93,229.58 Da | 40.55 | 86.46 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18794 | SF2_C_RecQ | 197 | 332 | 4.23381E-54 | - |
| CDD | cd17920 | DEXHc_RecQ | 2 | 196 | 1.10196E-92 | - |
| Pfam | PF00570 | HRDC domain | 545 | 611 | 7.2E-14 | IPR002121 |
| Pfam | PF09382 | RQC domain | 400 | 501 | 4.6E-22 | IPR018982 |
| Pfam | PF00270 | DEAD/DEAH box helicase | 16 | 175 | 1.7E-19 | IPR011545 |
| Pfam | PF16124 | RecQ zinc-binding | 335 | 395 | 6.5E-11 | IPR032284 |
| Pfam | PF14493 | Helix-turn-helix domain | 654 | 748 | 2.0E-15 | IPR029491 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 218 | 322 | 7.7E-20 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 8 | 337 | 2.82E-37 | IPR027417 |
| SUPERFAMILY | SSF47819 | HRDC-like | 540 | 621 | 4.58E-17 | IPR010997 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 195 | 445 | 1.57E-53 | IPR027417 |
| Gene3D | G3DSA:1.10.10.10 | - | 398 | 522 | 1.8E-32 | IPR036388 |
| Gene3D | G3DSA:1.10.150.80 | HRDC domain | 539 | 626 | 1.7E-15 | IPR044876 |
| Gene3D | G3DSA:3.40.50.300 | - | 1 | 195 | 2.4E-69 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 197 | 397 | 1.2E-56 | IPR027417 |
| SMART | SM00487 | ultradead3 | 10 | 205 | 2.9E-29 | IPR014001 |
| SMART | SM00490 | helicmild6 | 242 | 323 | 6.3E-27 | IPR001650 |
| SMART | SM00341 | hrdc7 | 542 | 622 | 4.0E-6 | IPR002121 |
| SMART | SM00956 | RQC_2 | 403 | 507 | 1.1E-21 | IPR018982 |
| TIGRFAM | TIGR00614 | recQ_fam: ATP-dependent DNA helicase, RecQ family | 5 | 455 | 1.0E-147 | IPR004589 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 217 | 368 | 18.670166 | IPR001650 |
| ProSiteProfiles | PS50967 | HRDC domain profile. | 542 | 622 | 17.946434 | IPR002121 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 22 | 189 | 22.94556 | IPR014001 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 807 | 839 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 782 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 767 | 786 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G31360.4 | - | 0 |
| RefSeq | XP_006658140.1 | probable ATP-dependent DNA helicase RecQ [Oryza brachyantha] | 0 |
| P71359 | ATP-dependent DNA helicase RecQ OS=Haemophilus influenzae (strain ATCC 51907 / DSM 11121 / KW20 / Rd) OX=71421 GN=recQ PE=3 SV=1 | 0 | |
| TrEMBL | J3MP69 | ATP-dependent DNA helicase OS=Oryza brachyantha OX=4533 GN=102716053 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology