Basic Information
Locus ID:
Oco14G016740
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
SNF2 family N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 20573373 | 20588987 | - | Oco14G016740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.74 | 190,045.47 Da | 49.32 | 82.78 | -0.41 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18070 | DEXQc_SHPRH | 285 | 699 | 2.32028E-84 | - |
| CDD | cd18793 | SF2_C_SNF | 1456 | 1597 | 6.15397E-33 | - |
| Pfam | PF00176 | SNF2 family N-terminal domain | 288 | 793 | 1.3E-87 | IPR000330 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 401 | 444 | 7.53E-9 | IPR011011 |
| SUPERFAMILY | SSF57850 | RING/U-box | 1363 | 1422 | 7.42E-8 | - |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 271 | 698 | 7.79E-41 | IPR027417 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 605 | 1612 | 1.53E-31 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 1436 | 1657 | 3.9E-38 | IPR027417 |
| Gene3D | G3DSA:3.40.50.10810 | - | 486 | 700 | 3.3E-34 | IPR038718 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 1360 | 1435 | 2.2E-8 | IPR013083 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 395 | 449 | 1.7E-10 | IPR013083 |
| SMART | SM00249 | PHD_3 | 405 | 493 | 1.1E-7 | IPR001965 |
| SMART | SM00184 | ring_2 | 1370 | 1418 | 8.3E-4 | IPR001841 |
| SMART | SM00490 | helicmild6 | 1490 | 1586 | 0.007 | IPR001650 |
| SMART | SM00487 | ultradead3 | 281 | 669 | 1.4E-20 | IPR014001 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 468 | 661 | 13.218952 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 1462 | 1638 | 9.084821 | IPR001650 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 1370 | 1419 | 10.541882 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 41 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1180 | 1199 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1648 | 1667 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G40770.1 | zinc ion binding;DNA binding;helicases;ATP binding;nucleic acid binding. | 0 |
| RefSeq | XP_015695228.2 | E3 ubiquitin-protein ligase SHPRH [Oryza brachyantha] | 0 |
| Q7TPQ3 | E3 ubiquitin-protein ligase SHPRH OS=Mus musculus OX=10090 GN=Shprh PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1D533 | Helicase ATP-binding domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_018354 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 1 | jg14178 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_6111 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah032125 |
| Amaranthaceae | Beta vulgaris | 1 | BVRB_2g038790 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg30110, Sbi_jg43563 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg18338 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00004103 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl66096, Sgl70410 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000012598, gene:ENSEOMG00000020813 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0003090, CQ.Regalona.r1.2BG0004240 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30178190 |
| Apiaceae | Apium graveolens | 2 | Ag3G02346, Ag3G02347 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G012450 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103702148 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_07.680.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri17G19234 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G40770.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10016132m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g23090.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB01g004630.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq04G1179 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl04G1338 |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g12750 |
| Dunaliellaceae | Dunaliella salina | 1 | Dusal.0351s00003.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 1 | gene.Thate06g06620 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG02.1666 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00036405 |
| Plumbaginaceae | Limonium bicolor | 1 | Lb2G14495 |
| Poaceae | Echinochloa crus-galli | 2 | AH03.4070, BH03.4409 |
| Poaceae | Eleusine coracana subsp. coracana | 1 | gene-QOZ80_7BG0613020 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0704900.1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_038720, gene-QYE76_038723 |
| Poaceae | Oryza coarctata | 1 | Oco14G016740 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G391500 |
| Poaceae | Puccinellia tenuiflora | 4 | Pt_Chr0305444, Pt_Chr0305460, Pt_Ctg00377, Pt_Ctg00378 |
| Poaceae | Sporobolus alterniflorus | 3 | Chr0G002460, Chr0G003600, Chr24G012340 |
| Poaceae | Thinopyrum elongatum | 1 | Tel2E01G227900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG012460, gene_TRIDC2BG015240 |
| Poaceae | Triticum aestivum | 3 | TraesCS2A02G104700.1, TraesCS2B02G121700.1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb330720_P003 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-85 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g7082 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG05.458, evm.TU.LG25.863 |
| Posidoniaceae | Posidonia oceanica | 1 | gene.Posoc01g27050 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_4_RagTag.874 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-27465 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-14527 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-1519 |
| Rhizophoraceae | Kandelia candel | 1 | evm.TU.utg000008l.560 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00000767 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-14346 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-19352 |
| Salicaceae | Populus euphratica | 1 | populus_peu19135 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132611224 |
| Solanaceae | Solanum chilense | 1 | SOLCI004794200 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107013516 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_14150 |
| Tamaricaceae | Tamarix chinensis | 1 | TC01G3959 |
| Zosteraceae | Zostera marina | 1 | Zosma01g29230.v3.1 |