Basic Information
Locus ID:
Oco14G016500
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 20320062 | 20322144 | + | Oco14G016500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.11 | 21,549.21 Da | 43.49 | 79.16 | -0.37 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 2 | 191 | 2.0E-83 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 22 | 143 | 1.5E-20 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 1 | 191 | 1.4E-85 | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 174 | 191 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 171 | 191 | - | - |
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 0 |
| RefSeq | XP_015644691.1 | 60S ribosomal protein L18-3 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q940B0 | Large ribosomal subunit protein eL18x OS=Arabidopsis thaliana OX=3702 GN=RPL18C PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D9X2V9 | Ribosomal_L18e/L15P domain-containing protein OS=Leersia perrieri OX=77586 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology