Basic Information
Locus ID:
Oco14G015580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RhoGAP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 19580279 | 19589975 | + | Oco14G015580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 95,635.40 Da | 53.74 | 76.26 | -0.60 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00159 | RhoGAP | 191 | 330 | 1.2085E-31 | - |
| CDD | cd00821 | PH | 31 | 130 | 6.45612E-12 | - |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 618 | 698 | 6.6E-22 | IPR025757 |
| Pfam | PF00169 | PH domain | 30 | 134 | 2.1E-12 | IPR001849 |
| Pfam | PF00620 | RhoGAP domain | 191 | 335 | 6.7E-31 | IPR000198 |
| SUPERFAMILY | SSF50729 | PH domain-like | 26 | 144 | 4.93E-18 | - |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 191 | 384 | 5.3E-33 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 19 | 136 | 6.9E-17 | IPR011993 |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 161 | 384 | 5.6E-41 | IPR008936 |
| SMART | SM00324 | RhoGAP_3 | 188 | 379 | 1.5E-23 | IPR000198 |
| SMART | SM00233 | PH_update | 29 | 137 | 4.5E-16 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 28 | 135 | 15.412601 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 182 | 382 | 29.813625 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 760 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 854 | 868 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 849 | 868 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 771 | 795 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 394 | 413 | - | - |
| Coils | Coil | Coil | 820 | 840 | - | - |
| Coils | Coil | Coil | 667 | 701 | - | - |
| Coils | Coil | Coil | 608 | 642 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_052161809.1 | rho GTPase-activating protein 7-like isoform X2 [Oryza glaberrima] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0D3GUI7 | Rho GTPase-activating protein 7 OS=Oryza barthii OX=65489 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology