Basic Information
Locus ID:
Oco14G013500
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Leucine rich repeat N-terminal domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 17956452 | 17962761 | + | Oco14G013500 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.95 | 79,945.74 Da | 38.07 | 86.29 | -0.30 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 434 | 702 | 5.67037E-85 | - |
| Pfam | PF13855 | Leucine rich repeat | 165 | 208 | 1.4E-8 | IPR001611 |
| Pfam | PF08263 | Leucine rich repeat N-terminal domain | 36 | 76 | 2.0E-8 | IPR013210 |
| Pfam | PF00069 | Protein kinase domain | 431 | 697 | 4.3E-39 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 409 | 699 | 1.64E-68 | IPR011009 |
| SUPERFAMILY | SSF52058 | L domain-like | 35 | 246 | 3.36E-39 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 389 | 505 | 1.4E-23 | - |
| Gene3D | G3DSA:3.80.10.10 | Ribonuclease Inhibitor | 35 | 261 | 5.4E-45 | IPR032675 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 506 | 721 | 7.5E-54 | - |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 428 | 702 | 34.435383 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 434 | 457 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 279 | 296 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 269 | 299 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G53730.1 | STRUBBELIG-receptor family 6. | 0 |
| RefSeq | XP_006657962.3 | protein STRUBBELIG-RECEPTOR FAMILY 7-like isoform X2 [Oryza brachyantha] | 0 |
| Q9C8M9 | Protein STRUBBELIG-RECEPTOR FAMILY 6 OS=Arabidopsis thaliana OX=3702 GN=SRF6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1D5G8 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022927 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology