Basic Information
Locus ID:
Oco14G013340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 17812249 | 17817271 | + | Oco14G013340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.89 | 46,420.68 Da | 45.83 | 75.21 | -0.36 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd12352 | RRM1_TIA1_like | 67 | 137 | 3.64575E-34 | - |
| CDD | cd12354 | RRM3_TIA1_like | 270 | 343 | 1.70189E-32 | - |
| CDD | cd12619 | RRM2_PUB1 | 151 | 225 | 3.35572E-48 | - |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 271 | 337 | 2.7E-11 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 67 | 132 | 1.9E-12 | IPR000504 |
| Pfam | PF00076 | RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain) | 152 | 222 | 1.0E-19 | IPR000504 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 260 | 347 | 3.8E-21 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 144 | 236 | 2.01E-28 | IPR035979 |
| SUPERFAMILY | SSF54928 | RNA-binding domain, RBD | 55 | 143 | 1.75E-22 | IPR035979 |
| Gene3D | G3DSA:3.30.70.330 | - | 58 | 142 | 6.4E-19 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 246 | 346 | 4.9E-22 | IPR012677 |
| Gene3D | G3DSA:3.30.70.330 | - | 143 | 241 | 5.5E-28 | IPR012677 |
| SMART | SM00361 | rrm2_1 | 151 | 224 | 2.1E-5 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 66 | 135 | 8.4E-16 | IPR000504 |
| SMART | SM00361 | rrm2_1 | 270 | 339 | 15.0 | IPR003954 |
| SMART | SM00360 | rrm1_1 | 151 | 224 | 6.6E-25 | IPR000504 |
| SMART | SM00360 | rrm1_1 | 270 | 339 | 2.9E-16 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 65 | 139 | 14.982202 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 150 | 228 | 18.273893 | IPR000504 |
| ProSiteProfiles | PS50102 | Eukaryotic RNA Recognition Motif (RRM) profile. | 269 | 343 | 15.033368 | IPR000504 |
Gene Ontology
Molecular Function:
KEGG Pathway
KO Term:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G14100.1 | RNA-binding (RRM/RBD/RNP motifs) family protein. | 0 |
| RefSeq | XP_015644593.1 | oligouridylate-binding protein 1 [Oryza sativa Japonica Group] | 0 |
| Q9M427 | Oligouridylate-binding protein 1 OS=Nicotiana plumbaginifolia OX=4092 GN=UBP1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A6G1D7L7 | Oligouridylate-binding protein 1-like OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_022949 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology