Basic Information
Locus ID:
Oco14G011430
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Small ubiquitinrelated modifier
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 15881105 | 15882127 | + | Oco14G011430 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.98 | 27,785.95 Da | 44.04 | 66.32 | -0.58 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 180 | 243 | 6.52E-9 | IPR029071 |
| SUPERFAMILY | SSF54236 | Ubiquitin-like | 50 | 113 | 1.34E-6 | IPR029071 |
| Gene3D | G3DSA:3.10.20.90 | - | 43 | 119 | 1.7E-9 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 164 | 247 | 1.7E-12 | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G55160.1 | small ubiquitin-like modifier 2. Encodes a small ubiquitin-like modifier (SUMO) polypeptide that becomes covalently attached to various intracellular protein targets, much like ubiquitination, leading to post-translational modification of those targets. SUMO2 can form SUMO chains through lysine residue 10 during in vitro assays. | 0 |
| RefSeq | XP_052140334.1 | uncharacterized protein LOC127760156 isoform X2 [Oryza glaberrima] | 0 |
| P55857 | Small ubiquitin-related modifier 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SUMO1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1D0M8 | Rad60-SLD domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008930 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology