Basic Information
Locus ID:
Oco14G006740
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 9603779 | 9615213 | + | Oco14G006740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.56 | 134,058.92 Da | 54.13 | 70.67 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 944 | 1201 | 1.20547E-113 | - |
| CDD | cd06410 | PB1_UP2 | 168 | 263 | 2.45695E-46 | - |
| Pfam | PF00564 | PB1 domain | 181 | 265 | 1.9E-19 | IPR000270 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 940 | 1200 | 7.5E-62 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 930 | 1198 | 2.02E-77 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 180 | 269 | 1.57E-22 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 931 | 1025 | 4.3E-26 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 183 | 266 | 3.9E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1026 | 1216 | 2.8E-54 | - |
| SMART | SM00220 | serkin_6 | 938 | 1207 | 1.8E-59 | IPR000719 |
| SMART | SM00666 | PB1_new | 179 | 266 | 1.1E-31 | IPR000270 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 938 | 1204 | 41.403446 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 944 | 969 | - | IPR017441 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1063 | 1075 | - | IPR008271 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1128 | 1150 | 3.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1057 | 1075 | 3.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1172 | 1194 | 3.5E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1020 | 1033 | 3.5E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 12 | 31 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 116 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 127 | 158 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_015646837.1 | uncharacterized protein LOC4343083 [Oryza sativa Japonica Group] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A6G1DB77 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_037169 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology