Basic Information
Locus ID:
Oco14G006580
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 9144615 | 9158976 | - | Oco14G006580 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.08 | 88,831.49 Da | 63.17 | 62.52 | -0.84 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 363 | 391 | 6.6E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 397 | 424 | 6.2E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 356 | 393 | 2.04E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 355 | 393 | 4.8E-16 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 394 | 425 | 5.5E-9 | - |
| SMART | SM00547 | zf_4 | 365 | 389 | 4.9E-6 | IPR001876 |
| SMART | SM00547 | zf_4 | 398 | 422 | 1.5E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 396 | 425 | 9.416206 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 363 | 392 | 10.037277 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 367 | 386 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 400 | 419 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 695 | 754 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 29 | 48 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 565 | 609 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 567 | 606 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 422 | 447 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 713 | 750 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 84 | 116 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_006657642.2 | uncharacterized protein LOC102715867 [Oryza brachyantha] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A6G1D2E9 | Zinc finger protein VAR3, chloroplastic OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_014668 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology