halophFGD

Basic Information

Locus ID: Oco14G005360

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Essential component of the cytosolic iron-sulfur (Fe S) protein assembly machinery. Required for the maturation of extramitochondrial Fe S proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG14	6245631	6250501	+	Oco14G005360

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.03	41,709.99 Da	35.58	71.32	-0.37

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	29	372	3.27488E-68	-
Pfam	PF00400	WD domain, G-beta repeat	30	70	2.2E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	213	255	3.0E-7	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	330	371	0.0011	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	123	159	6.2E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	168	204	3.8E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	79	115	1.6E-4	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	27	371	3.66E-68	IPR036322
Gene3D	G3DSA:2.130.10.10	-	53	377	1.8E-109	IPR015943
SMART	SM00320	WD40_4	76	116	3.6E-7	IPR001680
SMART	SM00320	WD40_4	121	160	2.2E-10	IPR001680
SMART	SM00320	WD40_4	26	70	2.0E-7	IPR001680
SMART	SM00320	WD40_4	271	310	0.75	IPR001680
SMART	SM00320	WD40_4	166	205	9.8E-8	IPR001680
SMART	SM00320	WD40_4	211	255	2.7E-8	IPR001680
SMART	SM00320	WD40_4	321	372	1.1E-5	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	33	70	9.941962	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	128	169	14.78598	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	173	204	10.996502	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	329	379	8.518333	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	223	255	11.075592	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	33	70	11.912015	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	173	204	13.248743	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	355	379	9.873505	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	84	118	10.706503	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	84	118	12.881143	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	223	255	13.348998	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	128	162	12.024679	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	359	373	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	103	117	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	147	161	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	57	71	2.1E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	242	256	2.1E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	359	373	2.1E-7	IPR020472
Hamap	MF_03037	Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1].	25	375	29.178894	IPR028608

Gene Ontology

Biological Process:

GO:0016226 (iron-sulfur cluster assembly)

Molecular Function:

GO:0005515 (protein binding)

Cellular Component:

GO:0097361 (cytosolic [4Fe-4S] assembly targeting complex)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_006658445.2	protein CIA1 [Oryza brachyantha]
Swiss-Prot	O80990	Protein CIA1 OS=Arabidopsis thaliana OX=3702 GN=CIA1 PE=1 SV=2
TrEMBL	Q0D7F7	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0252000 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11623, jg31955, jg32687
Aizoaceae	Mesembryanthemum crystallinum	1	gene_14478
Amaranthaceae	Atriplex hortensis	1	Ah038380
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg2391, Sbi_jg34126
Amaranthaceae	Salicornia europaea	1	Seu_jg2382
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00012546
Amaranthaceae	Suaeda glauca	2	Sgl78109, Sgl80615
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016841, gene:ENSEOMG00000039732 ... gene:ENSEOMG00000051477
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.9AG0001770, CQ.Regalona.r1.9BG0020590
Anacardiaceae	Pistacia vera	1	pistato.v30275530
Apiaceae	Apium graveolens	5	Ag10G02042, Ag10G02043, Ag10G02044, Ag10G02045, Ag4G01465
Arecaceae	Cocos nucifera	2	COCNU_02G016520, scaffold004131G000030
Arecaceae	Phoenix dactylifera	3	gene-LOC103718010, gene-LOC103720025, gene-LOC120109818
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.642.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G11511, Ftri15G15672
Brassicaceae	Arabidopsis thaliana	2	AT2G26060.1, AT4G32990.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10002028m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp4g05920.v2.2
Brassicaceae	Brassica nigra	2	BniB02g024580.2N, BniB07g008040.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0668
Casuarinaceae	Casuarina glauca	1	Cgl04G0764
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno13g00470
Dunaliellaceae	Dunaliella salina	1	Dusal.0060s00023.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g11070
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2065
Plantaginaceae	Plantago ovata	1	Pov_00037624
Plumbaginaceae	Limonium bicolor	4	Lb2G09702, Lb2G09703, Lb5G28991, Lb5G28992
Poaceae	Echinochloa crus-galli	4	AH03.724, BH03.857, CH03.2, CH03.954
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_7AG0561970, gene-QOZ80_7BG0595540
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0731700.1
Poaceae	Lolium multiflorum	1	gene-QYE76_042018
Poaceae	Oryza coarctata	2	Oco13G004560, Oco14G005360
Poaceae	Oryza sativa	1	LOC_Os07g14830.1
Poaceae	Paspalum vaginatum	1	gene-BS78_02G112300
Poaceae	Sporobolus alterniflorus	5	Chr19G015590, Chr24G004550, Chr24G012880, Chr27G000550 ... Chr28G003920
Poaceae	Thinopyrum elongatum	2	Tel7E01G751700, Tel7E01G751900
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG061960, gene_TRIDC7BG055270
Poaceae	Triticum aestivum	6	TraesCS7A02G446400.2, TraesCS7A02G446500.1 ... TraesCS7B02G346100.1, TraesCS7B02G346200.1, TraesCS7D02G435400.1, TraesCS7D02G435500.1
Poaceae	Zea mays	1	Zm00001eb304430_P002
Poaceae	Zoysia japonica	2	nbis-gene-51868, nbis-gene-58360
Poaceae	Zoysia macrostachya	1	Zma_g4981
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.241, evm.TU.LG06.1038, evm.TU.LG11.487
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g22260, gene.Posoc10g01020
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_14_RagTag.771
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17657
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13603
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-17111
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000025l.14
Rhizophoraceae	Kandelia obovata	1	Maker00012285
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-15864
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8986
Salicaceae	Populus euphratica	2	populus_peu02424, populus_peu02430
Solanaceae	Lycium barbarum	5	gene-LOC132600334, gene-LOC132629872, gene-LOC132633644 ... gene-LOC132633645, gene-LOC132634025
Solanaceae	Solanum chilense	2	SOLCI004661900, SOLCI007330400
Solanaceae	Solanum pennellii	2	gene-LOC107030781, gene-LOC107031510
Tamaricaceae	Reaumuria soongarica	1	gene_12315
Tamaricaceae	Tamarix chinensis	1	TC07G0827
Zosteraceae	Zostera marina	1	Zosma04g24200.v3.1