Basic Information
Locus ID:
Oco14G004790
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 5406377 | 5407552 | + | Oco14G004790 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 29,623.73 Da | 30.16 | 85.27 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 229 | 3.6E-61 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 15 | 262 | 6.42E-45 | IPR036041 |
| Gene3D | G3DSA:4.10.470.10 | Ricin (A Subunit), domain 2 | 191 | 264 | 5.8E-35 | IPR016139 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 7 | 190 | 3.5E-49 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 17 | 30 | 1.0E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 70 | 85 | 1.0E-6 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 179 | 199 | 1.0E-6 | IPR017989 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039772178.1 | ribosome-inactivating protein-like [Panicum virgatum] | 0 |
| P28522 | Ribosome-inactivating protein OS=Zea mays OX=4577 PE=1 SV=1 | 0 | |
| TrEMBL | A0A8T0QAS1 | rRNA N-glycosylase OS=Panicum virgatum OX=38727 GN=PVAP13_7KG024832 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology