Basic Information
Locus ID:
Oco14G004460
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
UTP15 C terminal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 4914100 | 4916370 | + | Oco14G004460 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.61 | 58,756.80 Da | 43.69 | 84.62 | -0.23 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00400 | WD domain, G-beta repeat | 181 | 211 | 0.015 | IPR001680 |
| Pfam | PF00400 | WD domain, G-beta repeat | 222 | 252 | 0.076 | IPR001680 |
| Pfam | PF09384 | UTP15 C terminal | 387 | 528 | 6.9E-36 | IPR018983 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 47 | 337 | 1.03E-45 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 225 | 352 | 2.3E-15 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 24 | 224 | 3.4E-24 | IPR015943 |
| SMART | SM00320 | WD40_4 | 256 | 299 | 1.2 | IPR001680 |
| SMART | SM00320 | WD40_4 | 302 | 340 | 19.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 125 | 167 | 11.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 80 | 119 | 26.0 | IPR001680 |
| SMART | SM00320 | WD40_4 | 215 | 252 | 0.028 | IPR001680 |
| SMART | SM00320 | WD40_4 | 170 | 211 | 6.4E-5 | IPR001680 |
| ProSiteProfiles | PS50082 | Trp-Asp (WD) repeats profile. | 178 | 220 | 11.310488 | IPR001680 |
| ProSiteProfiles | PS50294 | Trp-Asp (WD) repeats circular profile. | 178 | 216 | 9.019239 | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G47990.1 | transducin family protein / WD-40 repeat family protein. Encodes a transducin family nucleolar protein with six WD40 repeats that is most likely involved in 18S rRNA biogenesis. The slow progression of the gametophytic division cycles in swa1 suggested that the SWA1 protein is required for the normal progression of mitotic division cycles through the regulation of cell metabolism. Ubiquitously expressed throughout the plant. | 0 |
| RefSeq | XP_052160845.1 | protein SLOW WALKER 1 [Oryza glaberrima] | 0 |
| O82266 | Protein SLOW WALKER 1 OS=Arabidopsis thaliana OX=3702 GN=SWA1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0E968 | UTP15_C domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Acanthaceae | Avicennia marina | 2 | jg37905, jg37908 |
| Aizoaceae | Mesembryanthemum crystallinum | 1 | gene_11643 |
| Amaranthaceae | Atriplex hortensis | 1 | Ah022014 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg1521, Sbi_jg35029 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg3224 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00011943 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl73790, Sgl77295 |
| Amaranthaceae | Chenopodium album | 3 | gene:ENSEOMG00000014984, gene:ENSEOMG00000018428 ... |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.2AG0008420, CQ.Regalona.r1.2BG0009330 |
| Apiaceae | Apium graveolens | 1 | Ag11G04616 |
| Arecaceae | Cocos nucifera | 1 | COCNU_04G005230 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103709103 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.686.V1.1 |
| Asteraceae | Flaveria trinervia | 2 | Ftri11G26437, Ftri12G11476 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G47990.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001392m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g29910.v2.2 |
| Brassicaceae | Brassica nigra | 2 | BniB01g000180.2N, BniS05187g230.2N |
| Cymodoceaceae | Cymodocea nodosa | 1 | gene.Cymno05g14080 |
| Dunaliellaceae | Dunaliella salina | 2 | Dusal.0343s00018.v1.0, Dusal.0343s00019.v1.0 |
| Hydrocharitaceae | Thalassia testudinum | 2 | gene.Thate04g27080, gene.Thate06g05810 |
| Malvaceae | Hibiscus hamabo Siebold & Zucc. | 1 | nbisL1-mrna-2599 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.251 |
| Plantaginaceae | Plantago ovata | 1 | Pov_00008191 |
| Poaceae | Echinochloa crus-galli | 3 | AH03.624, BH03.754, CH03.847 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_3AG0249400, gene-QOZ80_3BG0278810 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.7HG0747280.1.CDS1 |
| Poaceae | Lolium multiflorum | 3 | gene-QYE76_000111, gene-QYE76_042092, gene-QYE76_042973 |
| Poaceae | Oryza coarctata | 2 | Oco13G004000, Oco14G004460 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g12320.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_06G219000 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr01G035260, Chr04G011990, Chr12G004340, Chr13G012160 |
| Poaceae | Thinopyrum elongatum | 2 | Tel1E01G698200, Tel7E01G931100 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC7AG074480, gene_TRIDC7BG070780 |
| Poaceae | Triticum aestivum | 3 | TraesCS7A02G534500.1.cds1, TraesCS7B02G451600.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb303580_P001 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-49982 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g3585 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG06.1518, evm.TU.LG22.1193 |
| Posidoniaceae | Posidonia oceanica | 2 | gene.Posoc01g29740, gene.Posoc04g16550 |
| Rhizophoraceae | Bruguiera sexangula | 1 | evm.TU.Scaffold_5_RagTag.921 |
| Rhizophoraceae | Carallia pectinifolia | 1 | nbisL1-mrna-11422 |
| Rhizophoraceae | Ceriops tagal | 1 | nbisL1-mrna-7727 |
| Rhizophoraceae | Ceriops zippeliana | 1 | nbisL1-mrna-11541 |
| Rhizophoraceae | Kandelia candel | 1 | add.evm.TU.utg000006l.97 |
| Rhizophoraceae | Kandelia obovata | 1 | Maker00013836 |
| Rhizophoraceae | Rhizophora apiculata | 1 | nbisL1-mrna-20729 |
| Rhizophoraceae | Rhizophora mangle | 1 | nbisL1-mrna-7537 |
| Salicaceae | Populus euphratica | 3 | populus_peu01093, populus_peu27190, populus_peu37847 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132609293 |
| Solanaceae | Solanum chilense | 1 | SOLCI004455100 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107019796 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_11921 |
| Tamaricaceae | Tamarix chinensis | 1 | TC05G2052 |
| Zosteraceae | Zostera marina | 1 | Zosma03g30380.v3.1 |