Basic Information
Locus ID:
Oco14G003160
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Bromo adjacent homology domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 3260625 | 3268033 | + | Oco14G003160 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.28 | 24,933.95 Da | 63.44 | 54.59 | -0.70 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04714 | BAH_BAHCC1 | 20 | 158 | 1.2403E-54 | - |
| Pfam | PF01426 | BAH domain | 23 | 137 | 9.8E-22 | IPR001025 |
| Pfam | PF00628 | PHD-finger | 142 | 190 | 3.6E-10 | IPR019787 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 132 | 194 | 6.2E-19 | IPR011011 |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 135 | 207 | 6.1E-21 | IPR013083 |
| Gene3D | G3DSA:2.30.30.490 | - | 2 | 134 | 1.3E-28 | IPR043151 |
| SMART | SM00249 | PHD_3 | 142 | 189 | 6.7E-9 | IPR001965 |
| SMART | SM00439 | BAH_4 | 21 | 138 | 2.1E-37 | IPR001025 |
| ProSiteProfiles | PS51038 | BAH domain profile. | 21 | 138 | 23.04056 | IPR001025 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 140 | 191 | 9.2408 | IPR019787 |
| ProSitePatterns | PS01359 | Zinc finger PHD-type signature. | 143 | 188 | - | IPR019786 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 196 | 218 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 218 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G22140.2 | PHD finger family protein / bromo-adjacent homology (BAH) domain-containing protein. | 0 |
| RefSeq | XP_006657516.1 | chromatin remodeling protein EBS-like isoform X1 [Oryza brachyantha] | 0 |
| F4JL28 | Chromatin remodeling protein EBS OS=Arabidopsis thaliana OX=3702 GN=EBS PE=1 SV=1 | 0 | |
| TrEMBL | A0A0P0X312 | Os07g0186400 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0186400 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology