Basic Information
Locus ID:
Oco14G002020
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 2258662 | 2270558 | - | Oco14G002020 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.95 | 140,744.73 Da | 46.62 | 75.15 | -0.67 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02659 | peptidase_C19C | 292 | 620 | 4.43692E-165 | - |
| CDD | cd00121 | MATH | 151 | 274 | 2.17532E-37 | IPR002083 |
| Pfam | PF12436 | ICP0-binding domain of Ubiquitin-specific protease 7 | 719 | 971 | 1.5E-74 | IPR024729 |
| Pfam | PF00917 | MATH domain | 156 | 276 | 1.5E-17 | IPR002083 |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 294 | 615 | 1.5E-46 | IPR001394 |
| Pfam | PF14533 | Ubiquitin-specific protease C-terminal | 981 | 1189 | 5.3E-56 | IPR029346 |
| SUPERFAMILY | SSF49599 | TRAF domain-like | 151 | 284 | 5.72E-39 | - |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 289 | 646 | 2.75E-97 | IPR038765 |
| Gene3D | G3DSA:3.10.20.90 | - | 897 | 994 | 7.5E-28 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 781 | 895 | 1.6E-43 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 291 | 619 | 2.4E-88 | - |
| Gene3D | G3DSA:2.60.210.10 | Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A | 149 | 290 | 4.6E-50 | IPR008974 |
| SMART | SM00061 | math_3 | 151 | 255 | 3.5E-17 | IPR002083 |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 294 | 618 | 39.788551 | IPR028889 |
| ProSiteProfiles | PS50144 | MATH/TRAF domain profile. | 149 | 274 | 36.2696 | IPR002083 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 534 | 551 | - | IPR018200 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 295 | 310 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 35 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 115 | - | - |
| Coils | Coil | Coil | 631 | 658 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06600.1 | ubiquitin-specific protease 12. Encodes a ubiquitin-specific protease. | 0 |
| RefSeq | XP_015647294.1 | ubiquitin carboxyl-terminal hydrolase 12 isoform X2 [Oryza sativa Japonica Group] | 0 |
| Q9FPT1 | Ubiquitin C-terminal hydrolase 12 OS=Arabidopsis thaliana OX=3702 GN=UBP12 PE=1 SV=2 | 0 | |
| TrEMBL | I1Q8A2 | ubiquitinyl hydrolase 1 OS=Oryza glaberrima OX=4538 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology