Basic Information
Locus ID:
Oco14G001850
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 2059840 | 2069271 | + | Oco14G001850 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.59 | 94,914.94 Da | 43.65 | 83.09 | -0.24 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 277 | 836 | 1.5E-35 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 271 | 838 | 7.26E-53 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 270 | 495 | 1.0E-27 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 715 | 839 | 2.1E-27 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 277 | 839 | 28.15826 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 278 | 293 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 18 | 46 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 59 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_040381779.1 | ubiquitin carboxyl-terminal hydrolase 8 [Oryza brachyantha] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0LHD1 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology