Basic Information
Locus ID:
Oco14G000490
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG14 | 435901 | 437705 | + | Oco14G000490 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.30 | 17,797.72 Da | 31.28 | 72.78 | -0.56 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 87 | 158 | 1.04565E-29 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 86 | 156 | 1.1E-27 | IPR020189 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 87 | 158 | 3.14E-23 | IPR012340 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 16 | 94 | 1.86E-27 | IPR008991 |
| Gene3D | G3DSA:2.40.50.140 | - | 87 | 161 | 2.7E-31 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 1 | 86 | 1.7E-44 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 86 | 156 | 1.0E-31 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 18 | 155 | 5.8E-41 | IPR001884 |
| PIRSF | PIRSF003025 | Transl_init_eIF5A | 1 | 160 | 3.4E-65 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 51 | 58 | - | IPR019769 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_015647652.1 | eukaryotic translation initiation factor 5A-4 [Oryza sativa Japonica Group] | 0 |
| Q9AXQ3 | Eukaryotic translation initiation factor 5A-4 OS=Solanum lycopersicum OX=4081 PE=2 SV=1 | 0 | |
| TrEMBL | A3BFX9 | Eukaryotic translation initiation factor 5A OS=Oryza sativa subsp. japonica OX=39947 GN=OJ1118_G09.115 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology