Basic Information
Locus ID:
Oco13G016600
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Thiamine pyrophosphate enzyme, N-terminal TPP binding domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 21884029 | 21885798 | + | Oco13G016600 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.41 | 63,105.99 Da | 36.09 | 86.94 | -0.01 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02005 | TPP_PDC_IPDC | 385 | 572 | 7.54105E-78 | - |
| CDD | cd07038 | TPP_PYR_PDC_IPDC_like | 26 | 187 | 3.47835E-92 | - |
| Pfam | PF00205 | Thiamine pyrophosphate enzyme, central domain | 221 | 337 | 2.9E-18 | IPR012000 |
| Pfam | PF02775 | Thiamine pyrophosphate enzyme, C-terminal TPP binding domain | 432 | 560 | 5.5E-13 | IPR011766 |
| Pfam | PF02776 | Thiamine pyrophosphate enzyme, N-terminal TPP binding domain | 23 | 194 | 1.5E-36 | IPR012001 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 22 | 201 | 1.6E-45 | IPR029061 |
| SUPERFAMILY | SSF52467 | DHS-like NAD/FAD-binding domain | 209 | 362 | 3.71E-29 | IPR029035 |
| SUPERFAMILY | SSF52518 | Thiamin diphosphate-binding fold (THDP-binding) | 385 | 584 | 2.5E-35 | IPR029061 |
| Gene3D | G3DSA:3.40.50.1220 | - | 210 | 372 | 7.5E-40 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 20 | 196 | 9.4E-61 | - |
| Gene3D | G3DSA:3.40.50.970 | - | 378 | 574 | 1.4E-50 | - |
| PIRSF | PIRSF036565 | Pyruvt_ip_decrb | 17 | 584 | 4.6E-200 | IPR012110 |
Gene Ontology
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G33070.1 | Thiamine pyrophosphate dependent pyruvate decarboxylase family protein. | 0 |
| RefSeq | XP_052161536.1 | pyruvate decarboxylase 3, partial [Oryza glaberrima] | 0 |
| A2YQ76 | Pyruvate decarboxylase 3 OS=Oryza sativa subsp. indica OX=39946 GN=PDC3 PE=3 SV=2 | 0 | |
| TrEMBL | A0A0E0LQ48 | pyruvate decarboxylase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology