Basic Information
Locus ID:
Oco13G016590
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
UBA1
Description:
Belongs to the ubiquitin-activating E1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 21867689 | 21875389 | + | Oco13G016590 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.49 | 97,987.74 Da | 38.47 | 86.32 | -0.15 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00899 | ThiF family | 354 | 726 | 3.1E-35 | IPR000594 |
| Pfam | PF16190 | Ubiquitin-activating enzyme E1 FCCH domain | 165 | 235 | 6.1E-27 | IPR032418 |
| Pfam | PF16191 | Ubiquitin-activating enzyme E1 four-helix bundle | 233 | 296 | 1.5E-13 | IPR032420 |
| Pfam | PF10585 | Ubiquitin-activating enzyme active site | 469 | 616 | 5.1E-31 | IPR019572 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 354 | 722 | 8.63E-65 | IPR035985 |
| SUPERFAMILY | SSF69572 | Activating enzymes of the ubiquitin-like proteins | 62 | 353 | 2.88E-47 | IPR035985 |
| Gene3D | G3DSA:1.10.10.2660 | - | 631 | 678 | 3.3E-22 | IPR042063 |
| Gene3D | G3DSA:1.10.10.2660 | - | 453 | 610 | 4.6E-35 | IPR042063 |
| Gene3D | G3DSA:2.40.30.180 | - | 153 | 234 | 2.3E-79 | IPR042302 |
| Gene3D | G3DSA:3.40.50.720 | - | 679 | 725 | 3.3E-22 | - |
| Gene3D | G3DSA:3.40.50.12550 | - | 110 | 353 | 2.3E-79 | - |
| SMART | SM00985 | UBA_e1_C_a_2 | 707 | 800 | 1.8E-7 | IPR018965 |
| ProSitePatterns | PS00536 | Ubiquitin-activating enzyme signature 1. | 340 | 348 | - | IPR018074 |
| ProSitePatterns | PS00865 | Ubiquitin-activating enzyme active site. | 461 | 469 | - | IPR033127 |
Gene Ontology
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G06460.1 | ubiquitin activating enzyme 2. Encodes a ubiquitin-activating enzyme (E1), involved in the first step in conjugating multiple ubiquitins to proteins targeted for degradation. Gene is expressed in most tissues examined. | 0 |
| RefSeq | XP_015647669.1 | ubiquitin-activating enzyme E1 3 isoform X1 [Oryza sativa Japonica Group] | 0 |
| P31252 | Ubiquitin-activating enzyme E1 3 OS=Triticum aestivum OX=4565 GN=UBA3 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0I623 | E1 ubiquitin-activating enzyme OS=Oryza nivara OX=4536 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
No orthogroup found for Oco13G016590.