Basic Information
Locus ID:
Oco13G015680
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
60S ribosomal protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 21008511 | 21010608 | + | Oco13G015680 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 11.40 | 13,384.58 Da | 64.26 | 76.40 | -0.45 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF17135 | Ribosomal protein 60S L18 and 50S L18e | 18 | 78 | 1.8E-19 | IPR021131 |
| SUPERFAMILY | SSF52080 | Ribosomal proteins L15p and L18e | 29 | 79 | 3.53E-6 | IPR036227 |
| Gene3D | G3DSA:3.100.10.10 | - | 9 | 86 | 5.6E-20 | - |
| ProSitePatterns | PS01106 | Ribosomal protein L18e signature. | 54 | 71 | - | IPR021132 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 22 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 7 | 22 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G27850.1 | Ribosomal protein L18e/L15 superfamily protein. | 0 |
| RefSeq | XP_015644690.1 | 60S ribosomal protein L18-3 isoform X1 [Oryza sativa Japonica Group] | 0 |
| O65729 | Large ribosomal subunit protein eL18 (Fragment) OS=Cicer arietinum OX=3827 GN=RPL18 PE=2 SV=1 | 0 | |
| TrEMBL | F2DDC0 | Predicted protein (Fragment) OS=Hordeum vulgare subsp. vulgare OX=112509 PE=2 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology