Basic Information
Locus ID:
Oco13G015400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
WD40 repeats
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 20796408 | 20799265 | + | Oco13G015400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.37 | 64,341.41 Da | 40.38 | 82.25 | -0.12 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF12894 | Anaphase-promoting complex subunit 4 WD40 domain | 181 | 249 | 1.6E-4 | IPR024977 |
| Pfam | PF00400 | WD domain, G-beta repeat | 452 | 482 | 0.074 | IPR001680 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 206 | 484 | 1.43E-21 | IPR036322 |
| SUPERFAMILY | SSF50978 | WD40 repeat-like | 18 | 248 | 4.03E-8 | IPR036322 |
| Gene3D | G3DSA:2.130.10.10 | - | 97 | 259 | 3.6E-6 | IPR015943 |
| Gene3D | G3DSA:2.130.10.10 | - | 276 | 572 | 1.5E-14 | IPR015943 |
| SMART | SM00320 | WD40_4 | 195 | 236 | 1.9 | IPR001680 |
| SMART | SM00320 | WD40_4 | 442 | 483 | 0.05 | IPR001680 |
| SMART | SM00320 | WD40_4 | 399 | 439 | 18.0 | IPR001680 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G62770.1 | Transducin/WD40 repeat-like superfamily protein. Required for autophagosome formation during nutrient deprivation and senescence. | 0 |
| RefSeq | XP_025883008.1 | autophagy-related protein 18a-like [Oryza sativa Japonica Group] | 0 |
| Q93VB2 | Autophagy-related protein 18a OS=Arabidopsis thaliana OX=3702 GN=ATG18A PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LPL3 | WD_REPEATS_REGION domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology