Basic Information
Locus ID:
Oco13G015250
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Salt stress response/antifungal
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 20671839 | 20677635 | + | Oco13G015250 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.36 | 75,863.20 Da | 43.54 | 89.77 | -0.10 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd14066 | STKc_IRAK | 376 | 643 | 3.06291E-93 | - |
| Pfam | PF01657 | Salt stress response/antifungal | 179 | 270 | 1.6E-13 | IPR002902 |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 373 | 643 | 1.9E-45 | IPR001245 |
| Pfam | PF01657 | Salt stress response/antifungal | 52 | 150 | 1.6E-9 | IPR002902 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 348 | 643 | 2.02E-78 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 333 | 446 | 6.7E-35 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 447 | 658 | 1.1E-56 | - |
| Gene3D | G3DSA:3.30.430.20 | - | 46 | 156 | 2.2E-10 | IPR038408 |
| Gene3D | G3DSA:3.30.430.20 | - | 163 | 272 | 3.9E-21 | IPR038408 |
| SMART | SM00220 | serkin_6 | 370 | 643 | 8.6E-34 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 370 | 658 | 36.767494 | IPR000719 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 161 | 273 | 16.859987 | IPR002902 |
| ProSiteProfiles | PS51473 | Gnk2-homologous domain profile. | 48 | 156 | 12.868011 | IPR002902 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 492 | 504 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 376 | 398 | - | IPR017441 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.2 | - | 0 |
| RefSeq | XP_015646294.2 | cysteine-rich receptor-like protein kinase 15 [Oryza sativa Japonica Group] | 0 |
| Q0D5R3 | Cysteine-rich receptor-like protein kinase 6 OS=Oryza sativa subsp. japonica OX=39947 GN=CRK6 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0EFW9 | Protein kinase domain-containing protein OS=Oryza meridionalis OX=40149 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 4 | AH03.4000, BH03.4328, BH03.4330, CH07.183 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0580800, gene-QOZ80_7BG0611960 |
| Poaceae | Oryza coarctata | 1 | Oco13G015250 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g47230.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G383200 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G000630, Chr27G016880 |
| Poaceae | Zoysia japonica | 1 | nbis-gene-150 |