Basic Information
Locus ID:
Oco13G014760
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
RhoGAP domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 20236914 | 20247851 | + | Oco13G014760 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.07 | 94,714.54 Da | 52.85 | 78.61 | -0.52 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00821 | PH | 31 | 130 | 5.22921E-12 | - |
| CDD | cd00159 | RhoGAP | 191 | 330 | 1.61772E-30 | - |
| Pfam | PF00169 | PH domain | 30 | 134 | 1.1E-11 | IPR001849 |
| Pfam | PF14389 | Leucine-zipper of ternary complex factor MIP1 | 614 | 694 | 2.2E-22 | IPR025757 |
| Pfam | PF00620 | RhoGAP domain | 191 | 335 | 2.5E-30 | IPR000198 |
| SUPERFAMILY | SSF48350 | GTPase activation domain, GAP | 191 | 380 | 1.92E-33 | IPR008936 |
| SUPERFAMILY | SSF50729 | PH domain-like | 24 | 141 | 9.59E-18 | - |
| Gene3D | G3DSA:1.10.555.10 | Rho GTPase activation protein | 161 | 380 | 7.8E-41 | IPR008936 |
| Gene3D | G3DSA:2.30.29.30 | - | 16 | 137 | 2.0E-16 | IPR011993 |
| SMART | SM00324 | RhoGAP_3 | 188 | 375 | 2.8E-25 | IPR000198 |
| SMART | SM00233 | PH_update | 29 | 137 | 4.4E-15 | IPR001849 |
| ProSiteProfiles | PS50003 | PH domain profile. | 28 | 135 | 14.777 | IPR001849 |
| ProSiteProfiles | PS50238 | Rho GTPase-activating proteins domain profile. | 182 | 378 | 30.105244 | IPR000198 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 766 | 794 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 390 | 426 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 24 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 837 | 863 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 759 | 794 | - | - |
| Coils | Coil | Coil | 816 | 836 | - | - |
| Coils | Coil | Coil | 670 | 697 | - | - |
| Coils | Coil | Coil | 604 | 638 | - | - |
Gene Ontology
Biological Process:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19390.1 | Rho GTPase activation protein (RhoGAP) with PH domain. Encodes a protein with similarity to REN1, a Rho GTPase activating protein. | 0 |
| RefSeq | XP_052161809.1 | rho GTPase-activating protein 7-like isoform X2 [Oryza glaberrima] | 0 |
| Q8RWQ4 | Rho GTPase-activating protein 7 OS=Arabidopsis thaliana OX=3702 GN=ROPGAP7 PE=2 SV=1 | 0 | |
| TrEMBL | B8B5I6 | Rho GTPase-activating protein 7-like OS=Oryza sativa subsp. indica OX=39946 GN=OsI_27182 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology