Basic Information
Locus ID:
Oco13G013140
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the SKP1 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 19006934 | 19010045 | + | Oco13G013140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.65 | 17,032.32 Da | 33.81 | 98.77 | -0.11 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF03931 | Skp1 family, tetramerisation domain | 1 | 59 | 5.3E-18 | IPR016073 |
| Pfam | PF01466 | Skp1 family, dimerisation domain | 75 | 122 | 8.3E-23 | IPR016072 |
| SUPERFAMILY | SSF81382 | Skp1 dimerisation domain-like | 57 | 121 | 3.01E-22 | IPR036296 |
| SUPERFAMILY | SSF54695 | POZ domain | 1 | 59 | 3.66E-16 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 61 | 125 | 2.6E-26 | IPR011333 |
| Gene3D | G3DSA:3.30.710.10 | Potassium Channel Kv1.1; Chain A | 1 | 60 | 1.6E-17 | IPR011333 |
| SMART | SM00512 | skp1_3 | 1 | 74 | 1.7E-12 | IPR001232 |
| PIRSF | PIRSF028729 | SCF_Skp | 58 | 125 | 4.2E-29 | IPR016897 |
| PIRSF | PIRSF028729 | SCF_Skp | 1 | 61 | 8.9E-16 | IPR016897 |
Gene Ontology
Biological Process:
KEGG Pathway
Pathway:
ko04110 (Cell cycle)
map04110 (Cell cycle)
ko04111 (Cell cycle - yeast)
map04111 (Cell cycle - yeast)
ko04114 (Oocyte meiosis)
map04114 (Oocyte meiosis)
ko04120 (Ubiquitin mediated proteolysis)
map04120 (Ubiquitin mediated proteolysis)
ko04141 (Protein processing in endoplasmic reticulum)
map04141 (Protein processing in endoplasmic reticulum)
ko04310 (Wnt signaling pathway)
map04310 (Wnt signaling pathway)
ko04341 (Hedgehog signaling pathway - fly)
map04341 (Hedgehog signaling pathway - fly)
ko04350 (TGF-beta signaling pathway)
map04350 (TGF-beta signaling pathway)
ko04710 (Circadian rhythm)
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G34210.1 | SKP1-like 11. one of 20 SKP1 homologs in Arabidopsis. Protein is most similar to ASK12 and RNAi lines show defects in stamen development. | 0 |
| RefSeq | XP_021639921.1 | SKP1-like protein 1B [Hevea brasiliensis] | 0 |
| Q6PL11 | SKP1-like protein 1 OS=Oryza sativa subsp. japonica OX=39947 GN=SKP1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A5J5B431 | SKP1-like protein OS=Nyssa sinensis OX=561372 GN=F0562_027097 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology