Basic Information
Locus ID:
Oco13G012360
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the universal ribosomal protein uS3 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 18331064 | 18334068 | - | Oco13G012360 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.70 | 25,910.94 Da | 29.41 | 92.83 | -0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02413 | 40S_S3_KH | 17 | 97 | 3.80382E-50 | - |
| Pfam | PF07650 | KH domain | 22 | 95 | 3.5E-11 | IPR004044 |
| Pfam | PF00189 | Ribosomal protein S3, C-terminal domain | 108 | 190 | 1.9E-24 | IPR001351 |
| SUPERFAMILY | SSF54821 | Ribosomal protein S3 C-terminal domain | 95 | 193 | 2.62E-28 | IPR036419 |
| SUPERFAMILY | SSF54814 | Prokaryotic type KH domain (KH-domain type II) | 12 | 101 | 3.92E-25 | IPR009019 |
| Gene3D | G3DSA:3.30.1140.32 | - | 95 | 221 | 1.3E-65 | IPR036419 |
| Gene3D | G3DSA:3.30.300.20 | - | 1 | 93 | 5.3E-46 | IPR015946 |
| TIGRFAM | TIGR01008 | uS3_euk_arch: ribosomal protein uS3 | 10 | 212 | 6.0E-70 | IPR005703 |
| ProSiteProfiles | PS50823 | Type-2 KH domain profile. | 23 | 94 | 11.157513 | IPR004044 |
| ProSitePatterns | PS00548 | Ribosomal protein S3 signature. | 149 | 185 | - | IPR018280 |
Gene Ontology
Biological Process:
Molecular Function:
Cellular Component:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G35530.1 | Ribosomal protein S3 family protein. | 0 |
| RefSeq | XP_015647116.1 | 40S ribosomal protein S3-1 [Oryza sativa Japonica Group] | 0 |
| Q9FJA6 | Small ribosomal subunit protein uS3x OS=Arabidopsis thaliana OX=3702 GN=RPS3C PE=1 SV=1 | 0 | |
| TrEMBL | Q6YTY2 | Os07g0608500 protein OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0608500 PE=1 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology