Basic Information
Locus ID:
Oco13G011740
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
eukaryotic translation initiation factor
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 17782399 | 17785683 | - | Oco13G011740 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.30 | 23,089.99 Da | 36.31 | 81.45 | -0.48 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04468 | S1_eIF5A | 134 | 204 | 3.46514E-33 | - |
| Pfam | PF01287 | Eukaryotic elongation factor 5A hypusine, DNA-binding OB fold | 133 | 202 | 8.0E-29 | IPR020189 |
| SUPERFAMILY | SSF50104 | Translation proteins SH3-like domain | 63 | 141 | 1.71E-27 | IPR008991 |
| SUPERFAMILY | SSF50249 | Nucleic acid-binding proteins | 134 | 204 | 1.03E-25 | IPR012340 |
| Gene3D | G3DSA:2.40.50.140 | - | 134 | 206 | 1.9E-34 | - |
| Gene3D | G3DSA:2.30.30.30 | - | 48 | 133 | 5.6E-44 | IPR014722 |
| SMART | SM01376 | eIF_5a_2 | 133 | 202 | 1.0E-33 | IPR020189 |
| TIGRFAM | TIGR00037 | eIF_5A: translation elongation factor IF5A | 65 | 201 | 3.8E-42 | IPR001884 |
| ProSitePatterns | PS00302 | Eukaryotic initiation factor 5A hypusine signature. | 98 | 105 | - | IPR019769 |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G13950.1 | eukaryotic elongation factor 5A-1. Encodes eukaryotic translation initiation factor 5A (EIF-5A).In mammalian cells it functions as a shuttle protein that translocates mRNA from the nucleus to cytoplasmic ribosomes. Overexpression results in an increase in both primary and secondary xylem formation. In RNAi suppressed lines, xylem formation is reduced. | 0 |
| RefSeq | XP_015646952.1 | eukaryotic translation initiation factor 5A [Oryza sativa Japonica Group] | 0 |
| P80639 | Eukaryotic translation initiation factor 5A OS=Zea mays OX=4577 GN=TIF5A PE=1 SV=2 | 0 | |
| TrEMBL | B8B833 | Eukaryotic translation initiation factor 5A OS=Oryza sativa subsp. indica OX=39946 GN=OsI_26733 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology