halophFGD

Basic Information

Locus ID: Oco13G010850

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Belongs to the ubiquitin-conjugating enzyme family

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG13	16865070	16866508	+	Oco13G010850

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.67	37,288.21 Da	65.77	57.45	-1.31

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
MobiDBLite	mobidb-lite	consensus disorder prediction	121	224	-	-
MobiDBLite	mobidb-lite	consensus disorder prediction	121	209	-	-
Coils	Coil	Coil	184	218	-	-

KEGG Pathway

KO Term:

K20217 (ubiquitin-conjugating enzyme E2 E [EC:2.3.2.23])

Pathway:

ko04120 (Ubiquitin mediated proteolysis) map04120 (Ubiquitin mediated proteolysis)

Best hit

Source	Best Hit ID	Description	E-value
RefSeq	XP_015647157.1	adenylate cyclase, terminal-differentiation specific [Oryza sativa Japonica Group]	0
TrEMBL	A0A6G1D0G2	Uncharacterized protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008910 PE=4 SV=1	0

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

Orthology

Family	Species	Count	Orthologous Genes
Poaceae	Echinochloa crus-galli	5	AH03.3479, BH03.3693, CH03.3658, CH03.3896, CH03.3900
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_7AG0574250, gene-QOZ80_7BG0605530
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.2HG0131570.1.CDS1
Poaceae	Oryza coarctata	3	Oco13G002330, Oco13G010850, Oco14G011590
Poaceae	Oryza sativa	2	LOC_Os07g07820.1, LOC_Os07g38950.1
Poaceae	Paspalum vaginatum	1	gene-BS78_02G326200
Poaceae	Sporobolus alterniflorus	4	Chr19G003650, Chr24G011010, Chr27G013620, Chr28G010240
Poaceae	Triticum dicoccoides	2	gene_TRIDC2AG023840, gene_TRIDC2BG029300
Poaceae	Triticum aestivum	2	TraesCS2A02G187100.1.cds1, TraesCS2D02G200800.1.cds1
Poaceae	Zea mays	2	Zm00001eb107550_P001, Zm00001eb325390_P001
Poaceae	Zoysia japonica	2	nbis-gene-10513, nbis-gene-606
Poaceae	Zoysia macrostachya	2	Zma_g5419, Zma_g6711