Basic Information
Locus ID:
Oco13G010400
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Calcium-dependent protein kinase
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 16386110 | 16389823 | - | Oco13G010400 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 7.26 | 61,908.94 Da | 38.84 | 81.96 | -0.54 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd15898 | EFh_PI-PLC | 377 | 509 | 1.72059E-15 | - |
| CDD | cd05117 | STKc_CAMK | 70 | 328 | 7.99625E-142 | - |
| CDD | cd00051 | EFh | 448 | 510 | 2.49861E-16 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 447 | 510 | 4.9E-15 | IPR002048 |
| Pfam | PF13499 | EF-hand domain pair | 377 | 435 | 4.0E-7 | IPR002048 |
| Pfam | PF00069 | Protein kinase domain | 71 | 329 | 1.6E-76 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 69 | 340 | 3.91E-88 | IPR011009 |
| SUPERFAMILY | SSF47473 | EF-hand | 357 | 534 | 1.6E-41 | IPR011992 |
| Gene3D | G3DSA:1.10.238.10 | - | 338 | 512 | 3.0E-49 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 74 | 156 | 8.3E-31 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 157 | 337 | 5.7E-59 | - |
| SMART | SM00054 | efh_1 | 376 | 404 | 0.0021 | IPR002048 |
| SMART | SM00054 | efh_1 | 484 | 512 | 1.2E-6 | IPR002048 |
| SMART | SM00054 | efh_1 | 412 | 440 | 1.5 | IPR002048 |
| SMART | SM00054 | efh_1 | 448 | 476 | 0.4 | IPR002048 |
| SMART | SM00220 | serkin_6 | 71 | 329 | 5.6E-102 | IPR000719 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 480 | 515 | 14.569197 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 408 | 443 | 8.850639 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 372 | 407 | 13.564962 | IPR002048 |
| ProSiteProfiles | PS50222 | EF-hand calcium-binding domain profile. | 444 | 479 | 11.919133 | IPR002048 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 71 | 329 | 49.700104 | IPR000719 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 457 | 469 | - | IPR018247 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 191 | 203 | - | IPR008271 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 493 | 505 | - | IPR018247 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 77 | 100 | - | IPR017441 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 421 | 433 | - | IPR018247 |
| ProSitePatterns | PS00018 | EF-hand calcium-binding domain. | 385 | 397 | - | IPR018247 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 33 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 55 | - | - |
Gene Ontology
Biological Process:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G19450.1 | calcium-dependent protein kinase 19. calcium-dependent protein kinase (CDPK19) mRNA, complete | 0 |
| RefSeq | XP_006657859.1 | calcium-dependent protein kinase 20 [Oryza brachyantha] | 0 |
| Q84SL0 | Calcium-dependent protein kinase 20 OS=Oryza sativa subsp. japonica OX=39947 GN=CPK20 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1D1B0 | Calcium-dependent protein kinase 24 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_008967 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology