Basic Information
Locus ID:
Oco13G006130
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PB1 domain
Maps and Mapping Data
| Chromosome/Scaffold | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 10099153 | 10109965 | + | Oco13G006130 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.43 | 133,458.19 Da | 52.48 | 71.94 | -0.55 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd13999 | STKc_MAP3K-like | 941 | 1198 | 1.17627E-112 | - |
| CDD | cd06410 | PB1_UP2 | 169 | 264 | 8.53988E-45 | - |
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 937 | 1197 | 3.4E-62 | IPR001245 |
| Pfam | PF00564 | PB1 domain | 182 | 266 | 3.4E-18 | IPR000270 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 927 | 1195 | 2.35E-77 | IPR011009 |
| SUPERFAMILY | SSF54277 | CAD & PB1 domains | 181 | 267 | 7.06E-22 | - |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 928 | 1022 | 5.0E-25 | - |
| Gene3D | G3DSA:3.10.20.90 | - | 184 | 267 | 5.9E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 1023 | 1213 | 2.0E-55 | - |
| SMART | SM00666 | PB1_new | 180 | 267 | 1.7E-30 | IPR000270 |
| SMART | SM00220 | serkin_6 | 935 | 1204 | 1.9E-59 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 935 | 1201 | 41.332775 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 1060 | 1072 | - | IPR008271 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 941 | 966 | - | IPR017441 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1125 | 1147 | 1.0E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1054 | 1072 | 1.0E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1169 | 1191 | 1.0E-14 | IPR001245 |
| PRINTS | PR00109 | Tyrosine kinase catalytic domain signature | 1017 | 1030 | 1.0E-14 | IPR001245 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 118 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 517 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 128 | 158 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 493 | 527 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 29 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 13 | 29 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G79570.1 | Protein kinase superfamily protein with octicosapeptide/Phox/Bem1p domain. | 0 |
| RefSeq | XP_015646837.1 | uncharacterized protein LOC4343083 [Oryza sativa Japonica Group] | 0 |
| Q9SAJ2 | RAF-like serine/threonine-protein kinase 20 OS=Arabidopsis thaliana OX=3702 GN=RAF20 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LJX7 | Protein kinase domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology