Basic Information
Locus ID:
Oco13G006110
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Zinc finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 9998817 | 10008398 | - | Oco13G006110 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.04 | 72,015.46 Da | 47.83 | 55.97 | -0.88 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 237 | 265 | 2.4E-9 | IPR001876 |
| Pfam | PF00641 | Zn-finger in Ran binding protein and others | 271 | 298 | 9.7E-4 | IPR001876 |
| SUPERFAMILY | SSF90209 | Ran binding protein zinc finger-like | 230 | 266 | 3.37E-7 | IPR036443 |
| Gene3D | G3DSA:4.10.1060.10 | - | 268 | 299 | 4.9E-9 | - |
| Gene3D | G3DSA:4.10.1060.10 | - | 229 | 267 | 6.5E-16 | - |
| SMART | SM00547 | zf_4 | 272 | 296 | 1.6E-5 | IPR001876 |
| SMART | SM00547 | zf_4 | 239 | 263 | 1.6E-4 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 237 | 266 | 10.082446 | IPR001876 |
| ProSiteProfiles | PS50199 | Zinc finger RanBP2 type profile. | 270 | 299 | 9.393621 | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 241 | 260 | - | IPR001876 |
| ProSitePatterns | PS01358 | Zinc finger RanBP2-type signature. | 274 | 293 | - | IPR001876 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 613 | 632 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 571 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 589 | 608 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 211 | 233 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G55040.1 | zinc finger (Ran-binding) family protein. | 0 |
| RefSeq | XP_052162305.1 | uncharacterized protein LOC127779542 [Oryza glaberrima] | 0 |
| Q8S9K3 | Zinc finger protein VAR3, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=VAR3 PE=1 SV=2 | 0 | |
| TrEMBL | A0A0E0LJJ5 | Zinc finger protein VAR3, chloroplastic OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology