Basic Information
Locus ID:
Oco13G005990
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Short Name:
NTMC2T4.1
Description:
ntmc2t4,ntmc2type4
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 9170162 | 9186815 | - | Oco13G005990 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.51 | 54,853.20 Da | 33.79 | 104.88 | 0.04 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00030 | C2 | 264 | 364 | 1.48623E-28 | - |
| Pfam | PF00168 | C2 domain | 262 | 358 | 6.8E-23 | IPR000008 |
| Pfam | PF17047 | Synaptotagmin-like mitochondrial-lipid-binding domain | 68 | 247 | 4.0E-18 | IPR039010 |
| SUPERFAMILY | SSF49562 | C2 domain (Calcium/lipid-binding domain, CaLB) | 260 | 391 | 9.23E-30 | IPR035892 |
| Gene3D | G3DSA:2.60.40.150 | C2 domain | 257 | 416 | 7.7E-33 | IPR035892 |
| SMART | SM00239 | C2_3c | 263 | 361 | 6.7E-19 | IPR000008 |
| ProSiteProfiles | PS50004 | C2 domain profile. | 245 | 364 | 20.541616 | IPR000008 |
| ProSiteProfiles | PS51847 | Synaptotagmin-like mitochondrial lipid-binding proteins (SMP) domain profile. | 66 | 248 | 24.773821 | IPR031468 |
| PRINTS | PR00360 | C2 domain signature | 326 | 334 | 6.5E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 279 | 291 | 6.5E-5 | IPR000008 |
| PRINTS | PR00360 | C2 domain signature | 304 | 317 | 6.5E-5 | IPR000008 |
| Coils | Coil | Coil | 397 | 417 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G61050.1 | Calcium-dependent lipid-binding (CaLB domain) family protein. | 0 |
| RefSeq | XP_015646953.1 | synaptotagmin-5 [Oryza sativa Japonica Group] | 0 |
| Q9LEX1 | Calcium-dependent lipid-binding protein OS=Arabidopsis thaliana OX=3702 GN=CLB PE=1 SV=1 | 0 | |
| TrEMBL | J3KU73 | Synaptotagmin-4 OS=Oryza brachyantha OX=4533 GN=102713706 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology