Basic Information
Locus ID:
Oco13G005340
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
protein kinase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 7425751 | 7428319 | + | Oco13G005340 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 9.21 | 27,696.11 Da | 36.27 | 110.85 | 0.19 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF07714 | Protein tyrosine and serine/threonine kinase | 12 | 222 | 4.3E-24 | IPR001245 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 115 | 225 | 4.51E-35 | IPR011009 |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 105 | 246 | 3.0E-36 | - |
| SMART | SM00220 | serkin_6 | 36 | 243 | 1.7E-6 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 1 | 248 | 21.064619 | IPR000719 |
| ProSitePatterns | PS00108 | Serine/Threonine protein kinases active-site signature. | 142 | 154 | - | IPR008271 |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT4G23280.3 | - | 0 |
| RefSeq | XP_040381833.1 | receptor-like serine/threonine-protein kinase SD1-8 [Oryza brachyantha] | 0 |
| O81905 | Receptor-like serine/threonine-protein kinase SD1-8 OS=Arabidopsis thaliana OX=3702 GN=SD18 PE=1 SV=1 | 0 | |
| TrEMBL | Q6YS27 | Serine/threonine kinase-like protein OS=Oryza sativa subsp. japonica OX=39947 GN=B1114D08.20 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0102630.1 |
| Poaceae | Oryza coarctata | 1 | Oco13G005340 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g20610.1 |
| Poaceae | Puccinellia tenuiflora | 1 | Pt_Chr0205335 |
| Poaceae | Thinopyrum elongatum | 7 | Tel1E01G397100, Tel2E01G120500, Tel2E01G120600 ... |
| Poaceae | Triticum aestivum | 2 | TraesCS4A02G281900.1, TraesCSU02G212500.1 |