Basic Information
Locus ID:
Oco13G004730
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
PPR repeat
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 5958368 | 5960058 | + | Oco13G004730 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.84 | 55,262.35 Da | 39.27 | 95.28 | 0.20 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF01535 | PPR repeat | 254 | 276 | 0.072 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 71 | 115 | 3.5E-8 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 47 | 66 | 0.13 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 322 | 344 | 0.19 | IPR002885 |
| Pfam | PF13041 | PPR repeat family | 178 | 226 | 2.8E-11 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 357 | 379 | 1.1 | IPR002885 |
| Pfam | PF01535 | PPR repeat | 282 | 312 | 1.8E-5 | IPR002885 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 125 | 241 | 1.1E-23 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 251 | 495 | 2.5E-30 | IPR011990 |
| Gene3D | G3DSA:1.25.40.10 | Tetratricopeptide repeat domain | 33 | 124 | 5.5E-16 | IPR011990 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 181 | 215 | 3.0E-7 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 282 | 315 | 9.2E-5 | IPR002885 |
| TIGRFAM | TIGR00756 | PPR: pentatricopeptide repeat domain | 73 | 106 | 8.9E-7 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 280 | 314 | 10.89559 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 179 | 213 | 11.925952 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 71 | 105 | 10.676364 | IPR002885 |
| ProSiteProfiles | PS51375 | Pentatricopeptide (PPR) repeat profile. | 148 | 178 | 8.648523 | IPR002885 |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT2G46050.1 | Pentatricopeptide repeat (PPR-like) superfamily protein. | 0 |
| RefSeq | XP_025882472.1 | pentatricopeptide repeat-containing protein At2g46050, mitochondrial isoform X1 [Oryza sativa Japonica Group] | 0 |
| O82363 | Pentatricopeptide repeat-containing protein At2g46050, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=PCMP-E39 PE=3 SV=1 | 0 | |
| TrEMBL | A2YK17 | DYW_deaminase domain-containing protein OS=Oryza sativa subsp. indica OX=39946 GN=OsI_25566 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Amaranthaceae | Beta vulgaris | 1 | BVRB_1g004360 |
| Amaranthaceae | Salicornia bigelovii | 2 | Sbi_jg4535, Sbi_jg49433 |
| Amaranthaceae | Salicornia europaea | 1 | Seu_jg5944 |
| Amaranthaceae | Suaeda aralocaspica | 1 | GOSA_00000469 |
| Amaranthaceae | Suaeda glauca | 2 | Sgl11046, Sgl16455 |
| Amaranthaceae | Chenopodium album | 1 | gene:ENSEOMG00000035500 |
| Amaranthaceae | Chenopodium quinoa | 2 | CQ.Regalona.r1.1AG0003120, CQ.Regalona.r1.2BG0025130 |
| Anacardiaceae | Pistacia vera | 1 | pistato.v30004720 |
| Apiaceae | Apium graveolens | 2 | Ag6G01577, Ag6G01578 |
| Arecaceae | Cocos nucifera | 1 | COCNU_07G009980 |
| Arecaceae | Phoenix dactylifera | 1 | gene-LOC103715482 |
| Asparagaceae | Asparagus officinalis | 1 | AsparagusV1_10.1408.V1.1 |
| Asteraceae | Flaveria trinervia | 1 | Ftri3G24567 |
| Brassicaceae | Arabidopsis thaliana | 1 | AT2G46050.1 |
| Brassicaceae | Eutrema salsugineum | 1 | Thhalv10001720m.g.v1.0 |
| Brassicaceae | Schrenkiella parvula | 1 | Sp4g28110.v2.2 |
| Brassicaceae | Brassica nigra | 1 | BniB06g004400.2N |
| Casuarinaceae | Casuarina equisetifolia | 1 | Ceq02G0957 |
| Casuarinaceae | Casuarina glauca | 1 | Cgl02G0987 |
| Nitrariaceae | Nitraria sibirica | 1 | evm.TU.LG04.844 |
| Poaceae | Echinochloa crus-galli | 1 | CH05.524 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_5AG0384580, gene-QOZ80_5BG0431340 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.1HG0074200.1.CDS1 |
| Poaceae | Lolium multiflorum | 2 | gene-QYE76_014417, gene-QYE76_014418 |
| Poaceae | Oryza coarctata | 1 | Oco13G004730 |
| Poaceae | Oryza sativa | 1 | LOC_Os07g15570.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_08G056700 |
| Poaceae | Sporobolus alterniflorus | 2 | Chr19G013240, Chr27G002650 |
| Poaceae | Thinopyrum elongatum | 1 | Tel1E01G454900 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC1AG041570, gene_TRIDC1BG047480 |
| Poaceae | Triticum aestivum | 3 | TraesCS1A02G279400.1.cds1, TraesCS1B02G288500.1.cds1 ... |
| Poaceae | Zea mays | 1 | Zm00001eb264840_P001 |
| Poaceae | Zoysia macrostachya | 1 | Zma_g24861 |
| Portulacaceae | Portulaca oleracea | 2 | evm.TU.LG04.2250, evm.TU.LG06.55 |
| Salicaceae | Populus euphratica | 1 | populus_peu27670 |
| Solanaceae | Lycium barbarum | 1 | gene-LOC132645556 |
| Solanaceae | Solanum chilense | 1 | SOLCI001074300 |
| Solanaceae | Solanum pennellii | 1 | gene-LOC107002761 |
| Tamaricaceae | Reaumuria soongarica | 1 | gene_15222 |
| Tamaricaceae | Tamarix chinensis | 1 | TC09G2243 |