halophFGD

Basic Information

Locus ID: Oco13G004560

Species & Taxonomic ID: Oryza coarctata & 77588

Genome Assembly: GCA_030770085.1

Description: Essential component of the cytosolic iron-sulfur (Fe S) protein assembly machinery. Required for the maturation of extramitochondrial Fe S proteins

Maps and Mapping Data

Chromosome	Start	End	Strand	ID
LG13	5631704	5636727	+	Oco13G004560

Protein Data

Protein Properties:

Theoretical pI	Molecular Weight	Instability Index	Aliphatic Index	GRAVY
5.07	38,987.87 Da	27.46	69.89	-0.42

Protein Domain:

Category	ID	Description	Start	End	Evalue/Score	InterPro ID
CDD	cd00200	WD40	12	345	9.51988E-68	-
Pfam	PF00400	WD domain, G-beta repeat	106	142	1.2E-8	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	14	53	2.0E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	313	344	2.2E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	60	98	9.9E-5	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	151	187	5.2E-4	IPR001680
Pfam	PF00400	WD domain, G-beta repeat	196	238	2.0E-7	IPR001680
SUPERFAMILY	SSF50978	WD40 repeat-like	11	344	2.49E-70	IPR036322
Gene3D	G3DSA:2.130.10.10	-	9	350	7.2E-116	IPR015943
SMART	SM00320	WD40_4	254	293	1.8	IPR001680
SMART	SM00320	WD40_4	9	53	6.3E-5	IPR001680
SMART	SM00320	WD40_4	194	238	5.2E-9	IPR001680
SMART	SM00320	WD40_4	104	143	2.8E-11	IPR001680
SMART	SM00320	WD40_4	149	188	1.6E-7	IPR001680
SMART	SM00320	WD40_4	59	99	2.0E-7	IPR001680
SMART	SM00320	WD40_4	304	345	2.2E-7	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	67	108	13.215325	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	111	152	15.086744	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	312	352	12.914561	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	111	145	12.26195	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	16	53	9.019239	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	206	238	13.348998	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	67	104	10.917412	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	206	238	11.075592	-
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	312	352	12.051043	-
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	16	53	10.742378	IPR001680
ProSiteProfiles	PS50082	Trp-Asp (WD) repeats profile.	156	187	13.148488	IPR001680
ProSiteProfiles	PS50294	Trp-Asp (WD) repeats circular profile.	156	187	10.917412	-
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	130	144	-	IPR019775
ProSitePatterns	PS00678	Trp-Asp (WD) repeats signature.	332	346	-	IPR019775
PRINTS	PR00320	G protein beta WD-40 repeat signature	130	144	2.8E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	332	346	2.8E-7	IPR020472
PRINTS	PR00320	G protein beta WD-40 repeat signature	225	239	2.8E-7	IPR020472
Hamap	MF_03037	Probable cytosolic iron-sulfur protein assembly protein CIAO1 [CIAO1].	8	348	29.072327	IPR028608

Gene Ontology

Biological Process:

GO:0016226 (iron-sulfur cluster assembly)

Molecular Function:

GO:0005515 (protein binding)

Cellular Component:

GO:0097361 (cytosolic [4Fe-4S] assembly targeting complex)

Best hit

Source	Best Hit ID	Description
TAIR	AT2G26060.1	Transducin/WD40 repeat-like superfamily protein.
RefSeq	XP_015644761.1	protein CIA1 [Oryza sativa Japonica Group]
Swiss-Prot	O80990	Protein CIA1 OS=Arabidopsis thaliana OX=3702 GN=CIA1 PE=1 SV=2
TrEMBL	Q0D7F7	Probable cytosolic iron-sulfur protein assembly protein CIAO1 homolog OS=Oryza sativa subsp. japonica OX=39947 GN=Os07g0252000 PE=3 SV=1

Expression

BioProject	Accession	TPM	Cultivar	Tissue	Development Stage	Sample Name	Description
No sample metadata found.

Network

🔍 Protein-Protein Interaction Network

Orthology

Family	Species	Count	Orthologous Genes
Acanthaceae	Avicennia marina	3	jg11623, jg31955, jg32687
Aizoaceae	Mesembryanthemum crystallinum	1	gene_14478
Amaranthaceae	Atriplex hortensis	1	Ah038380
Amaranthaceae	Salicornia bigelovii	2	Sbi_jg2391, Sbi_jg34126
Amaranthaceae	Salicornia europaea	1	Seu_jg2382
Amaranthaceae	Suaeda aralocaspica	1	GOSA_00012546
Amaranthaceae	Suaeda glauca	2	Sgl78109, Sgl80615
Amaranthaceae	Chenopodium album	3	gene:ENSEOMG00000016841, gene:ENSEOMG00000039732 ... gene:ENSEOMG00000051477
Amaranthaceae	Chenopodium quinoa	2	CQ.Regalona.r1.9AG0001770, CQ.Regalona.r1.9BG0020590
Anacardiaceae	Pistacia vera	1	pistato.v30275530
Apiaceae	Apium graveolens	5	Ag10G02042, Ag10G02043, Ag10G02044, Ag10G02045, Ag4G01465
Arecaceae	Cocos nucifera	2	COCNU_02G016520, scaffold004131G000030
Arecaceae	Phoenix dactylifera	3	gene-LOC103718010, gene-LOC103720025, gene-LOC120109818
Asparagaceae	Asparagus officinalis	1	AsparagusV1_04.642.V1.1
Asteraceae	Flaveria trinervia	2	Ftri12G11511, Ftri15G15672
Brassicaceae	Arabidopsis thaliana	2	AT2G26060.1, AT4G32990.1
Brassicaceae	Eutrema salsugineum	1	Thhalv10002028m.g.v1.0
Brassicaceae	Schrenkiella parvula	1	Sp4g05920.v2.2
Brassicaceae	Brassica nigra	2	BniB02g024580.2N, BniB07g008040.2N
Casuarinaceae	Casuarina equisetifolia	1	Ceq04G0668
Casuarinaceae	Casuarina glauca	1	Cgl04G0764
Cymodoceaceae	Cymodocea nodosa	1	gene.Cymno13g00470
Dunaliellaceae	Dunaliella salina	1	Dusal.0060s00023.v1.0
Hydrocharitaceae	Thalassia testudinum	1	gene.Thate06g11070
Nitrariaceae	Nitraria sibirica	1	evm.TU.LG01.2065
Plantaginaceae	Plantago ovata	1	Pov_00037624
Plumbaginaceae	Limonium bicolor	4	Lb2G09702, Lb2G09703, Lb5G28991, Lb5G28992
Poaceae	Echinochloa crus-galli	4	AH03.724, BH03.857, CH03.2, CH03.954
Poaceae	Eleusine coracana subsp. coracana	2	gene-QOZ80_7AG0561970, gene-QOZ80_7BG0595540
Poaceae	Hordeum vulgare	1	HORVU.MOREX.r3.7HG0731700.1
Poaceae	Lolium multiflorum	1	gene-QYE76_042018
Poaceae	Oryza coarctata	2	Oco13G004560, Oco14G005360
Poaceae	Oryza sativa	1	LOC_Os07g14830.1
Poaceae	Paspalum vaginatum	1	gene-BS78_02G112300
Poaceae	Sporobolus alterniflorus	5	Chr19G015590, Chr24G004550, Chr24G012880, Chr27G000550 ... Chr28G003920
Poaceae	Thinopyrum elongatum	2	Tel7E01G751700, Tel7E01G751900
Poaceae	Triticum dicoccoides	2	gene_TRIDC7AG061960, gene_TRIDC7BG055270
Poaceae	Triticum aestivum	6	TraesCS7A02G446400.2, TraesCS7A02G446500.1 ... TraesCS7B02G346100.1, TraesCS7B02G346200.1, TraesCS7D02G435400.1, TraesCS7D02G435500.1
Poaceae	Zea mays	1	Zm00001eb304430_P002
Poaceae	Zoysia japonica	2	nbis-gene-51868, nbis-gene-58360
Poaceae	Zoysia macrostachya	1	Zma_g4981
Portulacaceae	Portulaca oleracea	3	evm.TU.LG04.241, evm.TU.LG06.1038, evm.TU.LG11.487
Posidoniaceae	Posidonia oceanica	2	gene.Posoc05g22260, gene.Posoc10g01020
Rhizophoraceae	Bruguiera sexangula	1	evm.TU.Scaffold_14_RagTag.771
Rhizophoraceae	Carallia pectinifolia	1	nbisL1-mrna-17657
Rhizophoraceae	Ceriops tagal	1	nbisL1-mrna-13603
Rhizophoraceae	Ceriops zippeliana	1	nbisL1-mrna-17111
Rhizophoraceae	Kandelia candel	1	evm.TU.utg000025l.14
Rhizophoraceae	Kandelia obovata	1	Maker00012285
Rhizophoraceae	Rhizophora apiculata	1	nbisL1-mrna-15864
Rhizophoraceae	Rhizophora mangle	1	nbisL1-mrna-8986
Salicaceae	Populus euphratica	2	populus_peu02424, populus_peu02430
Solanaceae	Lycium barbarum	5	gene-LOC132600334, gene-LOC132629872, gene-LOC132633644 ... gene-LOC132633645, gene-LOC132634025
Solanaceae	Solanum chilense	2	SOLCI004661900, SOLCI007330400
Solanaceae	Solanum pennellii	2	gene-LOC107030781, gene-LOC107031510
Tamaricaceae	Reaumuria soongarica	1	gene_12315
Tamaricaceae	Tamarix chinensis	1	TC07G0827
Zosteraceae	Zostera marina	1	Zosma04g24200.v3.1