Basic Information
Locus ID:
Oco13G004140
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ribosome inactivating protein
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 4908096 | 4908758 | + | Oco13G004140 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.11 | 24,117.87 Da | 35.74 | 78.50 | -0.39 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00161 | Ribosome inactivating protein | 15 | 184 | 1.1E-35 | IPR001574 |
| SUPERFAMILY | SSF56371 | Ribosome inactivating proteins (RIP) | 15 | 146 | 1.31E-29 | IPR036041 |
| Gene3D | G3DSA:3.40.420.10 | Ricin (A subunit), domain 1 | 7 | 186 | 5.2E-43 | IPR016138 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 17 | 30 | 1.1E-5 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 122 | 136 | 1.1E-5 | IPR017989 |
| PRINTS | PR00396 | Ribosome inactivating protein family signature | 67 | 82 | 1.1E-5 | IPR017989 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 201 | 220 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 203 | 220 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_039772178.1 | ribosome-inactivating protein-like [Panicum virgatum] | 0 |
| P28522 | Ribosome-inactivating protein OS=Zea mays OX=4577 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LIQ0 | rRNA N-glycosylase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology