Basic Information
Locus ID:
Oco13G002330
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the ubiquitin-conjugating enzyme family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 2508801 | 2517694 | + | Oco13G002330 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.86 | 64,760.85 Da | 58.68 | 72.42 | -0.51 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00195 | UBCc | 51 | 186 | 2.64615E-46 | IPR000608 |
| Pfam | PF00179 | Ubiquitin-conjugating enzyme | 52 | 183 | 4.6E-32 | IPR000608 |
| SUPERFAMILY | SSF54495 | UBC-like | 34 | 189 | 1.36E-44 | IPR016135 |
| Gene3D | G3DSA:3.10.110.10 | Ubiquitin Conjugating Enzyme | 39 | 188 | 3.3E-46 | IPR016135 |
| SMART | SM00212 | ubc_7 | 51 | 191 | 2.0E-43 | - |
| ProSiteProfiles | PS50127 | Ubiquitin-conjugating (UBC) core domain profile. | 48 | 191 | 40.543694 | IPR000608 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 327 | 388 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 20 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 338 | 387 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 580 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 561 | 592 | - | - |
| Coils | Coil | Coil | 365 | 392 | - | - |
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13550.1 | Ubiquitin-conjugating enzyme family protein. Encodes a protein similar to ubiquitin-conjugating enzyme (E2) variant proteins (UEV); lacks catalytic cysteine residue found in ubiquitin-conjugating enzyme E2. Represses photomorphogenesis and induces skotomorphogenesis in the dark. | 0 |
| RefSeq | XP_040381997.1 | constitutive photomorphogenesis protein 10-like isoform X1 [Oryza brachyantha] | 0 |
| Q9LJD7 | Constitutive photomorphogenesis protein 10 OS=Arabidopsis thaliana OX=3702 GN=COP10 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LML3 | UBC core domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Echinochloa crus-galli | 5 | AH03.3479, BH03.3693, CH03.3658, CH03.3896, CH03.3900 |
| Poaceae | Eleusine coracana subsp. coracana | 2 | gene-QOZ80_7AG0574250, gene-QOZ80_7BG0605530 |
| Poaceae | Hordeum vulgare | 1 | HORVU.MOREX.r3.2HG0131570.1.CDS1 |
| Poaceae | Oryza coarctata | 3 | Oco13G002330, Oco13G010850, Oco14G011590 |
| Poaceae | Oryza sativa | 2 | LOC_Os07g07820.1, LOC_Os07g38950.1 |
| Poaceae | Paspalum vaginatum | 1 | gene-BS78_02G326200 |
| Poaceae | Sporobolus alterniflorus | 4 | Chr19G003650, Chr24G011010, Chr27G013620, Chr28G010240 |
| Poaceae | Triticum dicoccoides | 2 | gene_TRIDC2AG023840, gene_TRIDC2BG029300 |
| Poaceae | Triticum aestivum | 2 | TraesCS2A02G187100.1.cds1, TraesCS2D02G200800.1.cds1 |
| Poaceae | Zea mays | 2 | Zm00001eb107550_P001, Zm00001eb325390_P001 |
| Poaceae | Zoysia japonica | 2 | nbis-gene-10513, nbis-gene-606 |
| Poaceae | Zoysia macrostachya | 2 | Zma_g5419, Zma_g6711 |