Basic Information
Locus ID:
Oco13G002290
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ribosomal protein S13/S18
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 2483567 | 2493128 | + | Oco13G002290 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.38 | 161,907.53 Da | 44.63 | 73.27 | -0.62 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd04301 | NAT_SF | 930 | 991 | 6.92756E-4 | - |
| CDD | cd15539 | PHD1_AIRE | 739 | 777 | 2.28612E-18 | - |
| Pfam | PF16135 | Tify domain binding domain | 661 | 711 | 2.4E-19 | IPR032308 |
| SUPERFAMILY | SSF55729 | Acyl-CoA N-acyltransferases (Nat) | 920 | 1013 | 1.31E-7 | IPR016181 |
| SUPERFAMILY | SSF57903 | FYVE/PHD zinc finger | 729 | 785 | 2.17E-12 | IPR011011 |
| Gene3D | G3DSA:3.40.630.30 | - | 918 | 1020 | 7.4E-6 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 727 | 793 | 2.2E-14 | IPR013083 |
| SMART | SM00249 | PHD_3 | 738 | 778 | 3.5E-10 | IPR001965 |
| SMART | SM00249 | PHD_3 | 781 | 835 | 4.9 | IPR001965 |
| ProSiteProfiles | PS50016 | Zinc finger PHD-type profile. | 736 | 780 | 8.9738 | IPR019787 |
| ProSiteProfiles | PS51186 | Gcn5-related N-acetyltransferase (GNAT) domain profile. | 875 | 1037 | 10.521357 | IPR000182 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 358 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 408 | 430 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 65 | 81 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 127 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 461 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 333 | 359 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 589 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 563 | 602 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 148 | 183 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 15 | 39 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 384 | 405 | - | - |
Gene Ontology
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G05380.1 | Acyl-CoA N-acyltransferase with RING/FYVE/PHD-type zinc finger protein. | 0 |
| RefSeq | XP_052162268.1 | uncharacterized protein LOC127779508 [Oryza glaberrima] | 0 |
| F4IXE7 | Increased DNA methylation 1 OS=Arabidopsis thaliana OX=3702 GN=IDM1 PE=1 SV=1 | 0 | |
| TrEMBL | A0A0E0LHP2 | PHD-type domain-containing protein OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology