Basic Information
Locus ID:
Oco13G001710
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the peptidase C19 family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG13 | 1877709 | 1886335 | + | Oco13G001710 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.52 | 98,627.84 Da | 48.80 | 79.23 | -0.38 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd02674 | Peptidase_C19R | 729 | 882 | 2.53245E-59 | - |
| Pfam | PF00443 | Ubiquitin carboxyl-terminal hydrolase | 260 | 881 | 6.4E-81 | IPR001394 |
| SUPERFAMILY | SSF54001 | Cysteine proteinases | 258 | 883 | 5.89E-106 | IPR038765 |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 252 | 489 | 1.1E-66 | - |
| Gene3D | G3DSA:3.90.70.10 | Cysteine proteinases | 692 | 884 | 5.2E-54 | - |
| ProSiteProfiles | PS50235 | Ubiquitin specific protease (USP) domain profile. | 260 | 884 | 53.521732 | IPR028889 |
| ProSitePatterns | PS00972 | Ubiquitin specific protease (USP) domain signature 1. | 261 | 276 | - | IPR018200 |
| ProSitePatterns | PS00973 | Ubiquitin specific protease (USP) domain signature 2. | 826 | 843 | - | IPR018200 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 618 | 649 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 621 | 649 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G22030.1 | ubiquitin-specific protease 8. | 0 |
| RefSeq | XP_052161138.1 | ubiquitin carboxyl-terminal hydrolase 8-like [Oryza glaberrima] | 0 |
| Q9C585 | Ubiquitin carboxyl-terminal hydrolase 8 OS=Arabidopsis thaliana OX=3702 GN=UBP8 PE=2 SV=2 | 0 | |
| TrEMBL | A0A0E0LHD1 | Ubiquitin carboxyl-terminal hydrolase OS=Oryza punctata OX=4537 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology