Basic Information
Locus ID:
Oco12G017810
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
beta-N-acetylhexosaminidase activity
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 22580810 | 22581769 | + | Oco12G017810 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 6.17 | 31,371.62 Da | 34.62 | 59.26 | -0.18 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd00325 | chitinase_GH19 | 76 | 287 | 2.13606E-106 | - |
| CDD | cd06921 | ChtBD1_GH19_hevein | 21 | 60 | 1.17755E-18 | - |
| Pfam | PF00182 | Chitinase class I | 75 | 287 | 4.7E-116 | IPR000726 |
| Pfam | PF00187 | Chitin recognition protein | 22 | 59 | 9.9E-14 | IPR001002 |
| SUPERFAMILY | SSF53955 | Lysozyme-like | 72 | 293 | 4.5E-99 | IPR023346 |
| SUPERFAMILY | SSF57016 | Plant lectins/antimicrobial peptides | 22 | 65 | 1.83E-13 | IPR036861 |
| Gene3D | G3DSA:3.30.20.10 | Endochitinase, domain 2 | 144 | 192 | 6.1E-27 | - |
| Gene3D | G3DSA:3.30.60.10 | - | 20 | 59 | 3.5E-17 | IPR036861 |
| Gene3D | G3DSA:1.10.530.10 | - | 60 | 297 | 7.4E-91 | - |
| SMART | SM00270 | ChitinBD_3 | 22 | 59 | 1.3E-17 | IPR001002 |
| PIRSF | PIRSF001060 | Endochitinase | 1 | 294 | 8.6E-118 | IPR016283 |
| ProSiteProfiles | PS50941 | Chitin-binding type-1 domain profile. | 20 | 61 | 11.184176 | IPR001002 |
| ProSitePatterns | PS00026 | Chitin recognition or binding domain signature. | 32 | 51 | - | IPR018371 |
| ProSitePatterns | PS00774 | Chitinases family 19 signature 2. | 200 | 210 | - | IPR000726 |
| ProSitePatterns | PS00773 | Chitinases family 19 signature 1. | 93 | 115 | - | IPR000726 |
| PRINTS | PR00451 | Chitin-binding domain signature | 30 | 38 | 2.6E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 45 | 52 | 2.6E-7 | IPR001002 |
| PRINTS | PR00451 | Chitin-binding domain signature | 38 | 45 | 2.6E-7 | IPR001002 |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Pathway:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G12500.1 | basic chitinase. encodes a basic chitinase involved in ethylene/jasmonic acid mediated signalling pathway during systemic acquired resistance based on expression analyses. | 0 |
| RefSeq | XP_052159272.1 | chitinase 1 [Oryza glaberrima] | 0 |
| Q42993 | Chitinase 1 OS=Oryza sativa subsp. japonica OX=39947 GN=Cht1 PE=2 SV=1 | 0 | |
| TrEMBL | A0A0E0KF33 | chitinase OS=Oryza punctata OX=4537 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology