Basic Information
Locus ID:
Oco12G016700
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Belongs to the DEAD box helicase family
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 21685453 | 21689074 | - | Oco12G016700 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 5.37 | 49,487.19 Da | 44.17 | 91.77 | -0.17 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd18787 | SF2_C_DEAD | 274 | 404 | 3.89301E-60 | - |
| CDD | cd17939 | DEADc_EIF4A | 65 | 263 | 3.83596E-135 | - |
| Pfam | PF00270 | DEAD/DEAH box helicase | 86 | 247 | 1.1E-39 | IPR011545 |
| Pfam | PF00271 | Helicase conserved C-terminal domain | 287 | 395 | 1.6E-28 | IPR001650 |
| SUPERFAMILY | SSF52540 | P-loop containing nucleoside triphosphate hydrolases | 130 | 415 | 2.35E-74 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 51 | 269 | 4.7E-67 | IPR027417 |
| Gene3D | G3DSA:3.40.50.300 | - | 270 | 434 | 1.1E-57 | IPR027417 |
| SMART | SM00487 | ultradead3 | 80 | 277 | 5.6E-57 | IPR014001 |
| SMART | SM00490 | helicmild6 | 314 | 395 | 4.1E-31 | IPR001650 |
| ProSiteProfiles | PS51195 | DEAD-box RNA helicase Q motif profile. | 61 | 89 | 10.920789 | IPR014014 |
| ProSiteProfiles | PS51192 | Superfamilies 1 and 2 helicase ATP-binding type-1 domain profile. | 92 | 262 | 28.711105 | IPR014001 |
| ProSiteProfiles | PS51194 | Superfamilies 1 and 2 helicase C-terminal domain profile. | 273 | 434 | 25.656265 | IPR001650 |
| ProSitePatterns | PS00039 | DEAD-box subfamily ATP-dependent helicases signature. | 208 | 216 | - | IPR000629 |
Gene Ontology
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT3G13920.1 | eukaryotic translation initiation factor 4A1. eukaryotic translation initiation factor 4A-1 | 0 |
| RefSeq | XP_006656443.1 | eukaryotic initiation factor 4A-1 [Oryza brachyantha] | 0 |
| P35683 | Eukaryotic initiation factor 4A-1 OS=Oryza sativa subsp. japonica OX=39947 GN=Os06g0701100 PE=2 SV=2 | 0 | |
| TrEMBL | A0A6G1E215 | Eukaryotic initiation factor 4A-11 OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_026192 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology