Basic Information
Locus ID:
Oco12G016220
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Protein kinase domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 21266431 | 21271863 | + | Oco12G016220 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.84 | 35,520.13 Da | 36.92 | 80.34 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF00069 | Protein kinase domain | 38 | 282 | 5.4E-35 | IPR000719 |
| SUPERFAMILY | SSF56112 | Protein kinase-like (PK-like) | 31 | 284 | 3.96E-54 | IPR011009 |
| Gene3D | G3DSA:3.30.200.20 | Phosphorylase Kinase; domain 1 | 27 | 117 | 3.1E-15 | - |
| Gene3D | G3DSA:1.10.510.10 | Transferase(Phosphotransferase) domain 1 | 118 | 312 | 3.8E-37 | - |
| SMART | SM00220 | serkin_6 | 37 | 282 | 9.5E-45 | IPR000719 |
| ProSiteProfiles | PS50011 | Protein kinase domain profile. | 37 | 282 | 30.619204 | IPR000719 |
| ProSitePatterns | PS00107 | Protein kinases ATP-binding region signature. | 43 | 66 | - | IPR017441 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 1 | 25 | - | - |
Gene Ontology
Biological Process:
Molecular Function:
KEGG Pathway
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT1G57700.1 | Protein kinase superfamily protein. | 0 |
| RefSeq | XP_052159529.1 | putative cyclin-dependent kinase F-2 [Oryza glaberrima] | 0 |
| F4ICB6 | Protein IMPAIRED IN BABA-INDUCED STERILITY 1 OS=Arabidopsis thaliana OX=3702 GN=IBS1 PE=3 SV=1 | 0 | |
| TrEMBL | A0A6G1CUM1 | Protein kinase domain-containing protein OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_029955 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology
| Family | Species | Count | Orthologous Genes |
|---|---|---|---|
| Poaceae | Lolium multiflorum | 4 | gene-QYE76_035621, gene-QYE76_035625, gene-QYE76_048303 ... |
| Poaceae | Oryza coarctata | 1 | Oco12G016220 |
| Poaceae | Triticum aestivum | 5 | TraesCS1B02G133700.1.cds1, TraesCS1D02G115000.1.cds1 ... |