Basic Information
Locus ID:
Oco12G015950
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
Ring finger domain
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 21041080 | 21042207 | + | Oco12G015950 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 4.67 | 41,284.25 Da | 52.45 | 85.73 | -0.26 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| Pfam | PF13639 | Ring finger domain | 324 | 367 | 7.7E-8 | IPR001841 |
| SUPERFAMILY | SSF57850 | RING/U-box | 324 | 372 | 6.62E-12 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 308 | 373 | 7.9E-11 | IPR013083 |
| ProSiteProfiles | PS50089 | Zinc finger RING-type profile. | 325 | 367 | 8.815781 | IPR001841 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 81 | 106 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 47 | 106 | - | - |
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| RefSeq | XP_040381137.1 | uncharacterized protein LOC121054732 [Oryza brachyantha] | 0 |
| TrEMBL | J3MH06 | RING-type domain-containing protein OS=Oryza brachyantha OX=4533 PE=4 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology