Basic Information
Locus ID:
Oco12G015420
Species & Taxonomic ID:
Oryza coarctata & 77588
Genome Assembly:
GCA_030770085.1
Description:
The RING-variant domain is a C4HC3 zinc-finger like motif found in a number of cellular and viral proteins. Some of these proteins have been shown both in vivo and in vitro to have ubiquitin E3 ligase activity.
Maps and Mapping Data
| Chromosome | Start | End | Strand | ID |
|---|---|---|---|---|
| LG12 | 20568403 | 20572733 | + | Oco12G015420 |
Protein Data
Protein Properties:
| Theoretical pI | Molecular Weight | Instability Index | Aliphatic Index | GRAVY |
|---|---|---|---|---|
| 8.77 | 56,058.81 Da | 64.36 | 87.66 | -0.31 |
Protein Domain:
| Category | ID | Description | Start | End | Evalue/Score | InterPro ID |
|---|---|---|---|---|---|---|
| CDD | cd16495 | RING_CH-C4HC3_MARCH | 271 | 319 | 5.68355E-16 | - |
| Pfam | PF12906 | RING-variant domain | 271 | 318 | 2.8E-11 | IPR011016 |
| SUPERFAMILY | SSF57850 | RING/U-box | 267 | 322 | 1.77E-13 | - |
| Gene3D | G3DSA:3.30.40.10 | Zinc/RING finger domain, C3HC4 (zinc finger) | 260 | 326 | 4.2E-16 | IPR013083 |
| SMART | SM00744 | ringv_2 | 270 | 319 | 5.8E-18 | IPR011016 |
| ProSiteProfiles | PS51292 | Zinc finger RING-CH-type profile. | 263 | 325 | 19.34767 | IPR011016 |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 172 | 195 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 476 | 513 | - | - |
| MobiDBLite | mobidb-lite | consensus disorder prediction | 82 | 130 | - | - |
Gene Ontology
Molecular Function:
Best hit
| Source | Best Hit ID | Description | E-value |
|---|---|---|---|
| TAIR | AT5G60580.1 | RING/U-box superfamily protein. | 0 |
| RefSeq | XP_052160594.1 | uncharacterized protein LOC127778000 isoform X2 [Oryza glaberrima] | 0 |
| TrEMBL | A0A6G1CQ71 | 3-hydroxyisobutyrate dehydrogenase OS=Oryza meyeriana var. granulata OX=110450 GN=E2562_015527 PE=3 SV=1 | 0 |
Expression
| BioProject | Accession | TPM | Cultivar | Tissue | Development Stage | Sample Name | Description |
|---|---|---|---|---|---|---|---|
| No sample metadata found. | |||||||
Orthology